SUPERFAMILY 1.75 HMM library and genome assignments server

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NadC C-terminal domain-like family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   TIM beta/alpha-barrel [ 51350] (33)
Superfamily:   Nicotinate/Quinolinate PRTase C-terminal domain-like [ 51690] (2)
Family:   NadC C-terminal domain-like [ 51691] (4)


Family statistics
Genomes (2,694) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 3,848 21,068 6
Proteins 3,848 21,065 6


Gene Ontology (high-coverage)

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show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) heterocycle metabolic process 0.00000000049 Least Informative Direct
Biological Process (BP) cellular aromatic compound metabolic process 0.0000000005806 Least Informative Direct
Biological Process (BP) organic cyclic compound metabolic process 0.000000001743 Least Informative Direct
Biological Process (BP) cellular nitrogen compound metabolic process 0.000000002689 Least Informative Direct
Biological Process (BP) single-organism metabolic process 0.00000002422 Least Informative Direct
Biological Process (BP) organonitrogen compound metabolic process 0.0000002818 Least Informative Direct
Biological Process (BP) primary metabolic process 0.00002895 Least Informative Direct
Biological Process (BP) biosynthetic process 0.00005609 Least Informative Direct
Biological Process (BP) single-organism cellular process 0.000583 Least Informative Direct
Biological Process (BP) response to stimulus 0.2607 Least Informative Inherited
Biological Process (BP) nucleobase-containing small molecule metabolic process 0 Moderately Informative Direct
Biological Process (BP) organophosphate metabolic process 0 Moderately Informative Direct
Biological Process (BP) cofactor metabolic process 0 Moderately Informative Direct
Biological Process (BP) phosphate-containing compound metabolic process 0.000000000001203 Moderately Informative Direct
Biological Process (BP) aromatic compound biosynthetic process 0.0000005477 Moderately Informative Direct
Biological Process (BP) heterocycle biosynthetic process 0.000001112 Moderately Informative Direct
Biological Process (BP) organic cyclic compound biosynthetic process 0.000003067 Moderately Informative Direct
Biological Process (BP) cellular nitrogen compound biosynthetic process 0.00003565 Moderately Informative Direct
Biological Process (BP) response to stress 0.001444 Moderately Informative Inherited
Biological Process (BP) oxidoreduction coenzyme metabolic process 0 Informative Direct
Biological Process (BP) pyridine-containing compound metabolic process 0 Informative Direct
Biological Process (BP) nucleoside phosphate biosynthetic process 0.000000000167 Informative Direct
Biological Process (BP) response to oxidative stress 0.000002741 Informative Direct
Biological Process (BP) coenzyme biosynthetic process 0.00007805 Informative Direct
Biological Process (BP) pyridine-containing compound biosynthetic process 0 Highly Informative Direct
Biological Process (BP) NAD metabolic process 0 Highly Informative Direct
Molecular Function (MF) transferase activity 0.00000000000003337 Least Informative Direct
Molecular Function (MF) transferase activity, transferring glycosyl groups 0 Informative Direct
Molecular Function (MF) transferase activity, transferring pentosyl groups 0 Highly Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Glycosyltransferases0Moderately InformativeDirect
Enzyme Commission (EC)Pentosyltransferases0InformativeDirect
Enzyme Commission (EC)Nicotinate phosphoribosyltransferase0.00000000002045Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processPyridine nucleotide biosynthesis0Highly InformativeDirect
Post-translational modificationTransferase0Least InformativeDirect
Post-translational modificationGlycosyltransferase0InformativeDirect
Post-translational modificationLigase0.0000005622InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 9 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Nicotinate/Quinolinate PRTase C-terminal domain-like domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]