SUPERFAMILY 1.75 HMM library and genome assignments server

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Ribosomal protein L32e superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   Barstar-like [ 52037] (2)
Superfamily:   Ribosomal protein L32e [ 52042]
Families:   Ribosomal protein L32e [ 52043]


Superfamily statistics
Genomes (645) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 1,125 3,026 5
Proteins 1,120 3,007 5


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Molecular Function (MF)structural molecule activity0.0000000015670.000000001459Moderately InformativeDirect
Cellular Component (CC)cytoplasmic part0.00000061270.000001189Least InformativeDirect
Cellular Component (CC)non-membrane-bounded organelle0.0000048770.00002149Least InformativeDirect
Cellular Component (CC)intracellular organelle part0.00029430.0009337Least InformativeDirect
Cellular Component (CC)cytosolic part0.00000000092630.00000000008806Moderately InformativeDirect
Cellular Component (CC)ribosome0.0000000011980.00000000004299Moderately InformativeDirect
Cellular Component (CC)large ribosomal subunit00InformativeDirect
Cellular Component (CC)cytosolic ribosome0.0000000000000026290InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Molecular Function (MF) structural molecule activity 0.000000001459 Moderately Informative Direct
Cellular Component (CC) cytoplasmic part 0.000001189 Least Informative Direct
Cellular Component (CC) non-membrane-bounded organelle 0.00002149 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.0009337 Least Informative Direct
Cellular Component (CC) cytosolic part 0.00000000008806 Moderately Informative Direct
Cellular Component (CC) ribosome 0.00000000004299 Moderately Informative Direct
Cellular Component (CC) large ribosomal subunit 0 Informative Direct
Cellular Component (CC) cytosolic ribosome 0 Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Post-translational modificationRibonucleoprotein0Moderately InformativeDirect
Post-translational modificationRibosomal protein0InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR001515 SSF52042 Protein matches
Abstract

The L32e family consists of proteins that have 135 to 240 amino-acid residues.


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Ribosomal protein L32e domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Ribosomal protein L32e superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]