SUPERFAMILY 1.75 HMM library and genome assignments server

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Nitrogenase iron protein-like family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   P-loop containing nucleoside triphosphate hydrolases [ 52539]
Superfamily:   P-loop containing nucleoside triphosphate hydrolases [ 52540] (24)
Family:   Nitrogenase iron protein-like [ 52652] (15)


Family statistics
Genomes (3,241) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 21,796 195,280 56
Proteins 21,561 193,415 55


Enzyme Commission (EC)

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show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Ligases0Least InformativeDirect
Enzyme Commission (EC)Acting on acid anhydrides1Least InformativeInherited
Enzyme Commission (EC)Oxidoreductases1Least InformativeInherited
Enzyme Commission (EC)Forming carbon-nitrogen bonds0Moderately InformativeDirect
Enzyme Commission (EC)Other carbon--nitrogen ligases0InformativeDirect
Enzyme Commission (EC)Acting on acid anhydrides; catalyzing transmembran1InformativeInherited
Enzyme Commission (EC)Non-specific protein-tyrosine kinase0.0004753Highly InformativeDirect

Document: EC annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of metabolism/homeostasis0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the immune system0.08601Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the digestive system0.2728Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of blood and blood-forming tissues0.03453Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of digestive system physiology0.1061Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormal leukocyte morphology0.001294InformativeInherited
Phenotypic Abnormality (PA)Nausea and vomiting0.03309InformativeInherited
Phenotypic Abnormality (PA)Abnormality of multiple cell lineages in the bone marrow0.0002064Highly InformativeDirect
Phenotypic Abnormality (PA)Vomiting0.0008683Highly InformativeDirect
Phenotypic Abnormality (PA)Abnormal lymphocyte morphology0.03552Highly InformativeInherited
Phenotypic Abnormality (PA)Leukopenia0.1998Highly InformativeInherited

Document: HP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)cell physiology variant0.03687Least InformativeInherited
Worm Phenotype (WP)cell development variant0.05444Least InformativeInherited
Worm Phenotype (WP)cell type morphology variant0.01169Moderately InformativeInherited
Worm Phenotype (WP)germ cell differentiation variant0.01542Moderately InformativeInherited
Worm Phenotype (WP)germ cell development variant0.0607Moderately InformativeInherited
Worm Phenotype (WP)cell cycle variant0.08072Moderately InformativeInherited
Worm Phenotype (WP)cell division variant0.2373Moderately InformativeInherited
Worm Phenotype (WP)diplotene progression during oogenesis variant0.0004045InformativeDirect
Worm Phenotype (WP)mitosis variant0.0004282InformativeDirect
Worm Phenotype (WP)meiotic chromosome organization variant0.001146InformativeInherited
Worm Phenotype (WP)oocyte morphology variant0.1752InformativeInherited
Worm Phenotype (WP)chromosome condensation variant0.0001483Highly InformativeDirect
Worm Phenotype (WP)oocyte number decreased0.0003969Highly InformativeDirect

Document: WP annotation of SCOP domains

Fly Phenotype (FP)

(show details) Document: FP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)somatic cell0Least InformativeDirect

Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details)
ZA termFDR (all)SDZA levelAnnotation (direct or inherited)
Zebrafish Anatomy (ZA)organism subdivision0Least InformativeDirect
Zebrafish Anatomy (ZA)anatomical cluster0Least InformativeDirect
Zebrafish Anatomy (ZA)multi-tissue structure0Least InformativeDirect
Zebrafish Anatomy (ZA)head0Moderately InformativeDirect

Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)cavitated compound organ0Least InformativeDirect
Xenopus ANatomical entity (XAN)urogenital system0.06716Least InformativeInherited
Xenopus ANatomical entity (XAN)trunk0.1532Least InformativeInherited
Xenopus ANatomical entity (XAN)testis0.0009875Moderately InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)branch0.0003901Least InformativeDirect
Plant ANatomical entity (PAN)root0.0004758Least InformativeDirect
Plant ANatomical entity (PAN)inflorescence0.002817Least InformativeInherited
Plant ANatomical entity (PAN)vascular leaf0.004425Least InformativeInherited
Plant structure DEvelopment stage (PDE)E expanded cotyledon stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)F mature embryo stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)C globular stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)D bilateral stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.04 four leaves visible stage0Least InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Oxidoreductases1Least InformativeInherited
Enzyme Commission (EC)Transferases1Least InformativeInherited
Enzyme Commission (EC)Ligases0Moderately InformativeDirect
Enzyme Commission (EC)Isomerases1Moderately InformativeInherited
Enzyme Commission (EC)Acting on the CH-CH group of donors0InformativeDirect
Enzyme Commission (EC)Forming carbon-nitrogen bonds0InformativeDirect
Enzyme Commission (EC)Intramolecular transferases1InformativeInherited
Enzyme Commission (EC)Translocases1InformativeInherited
Enzyme Commission (EC)Acting on iron-sulfur proteins as donors0Highly InformativeDirect
Enzyme Commission (EC)Cyclo-ligases0Highly InformativeDirect
Enzyme Commission (EC)Non-specific protein-tyrosine kinase0.0005298Highly InformativeDirect
Enzyme Commission (EC)Transferring other groups1Highly InformativeInherited

Document: EC annotation of SCOP domains

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Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 512 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a P-loop containing nucleoside triphosphate hydrolases domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Human Phenotype (HP) · Worm Phenotype (WP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · Internal database links ]