SUPERFAMILY 1.75 HMM library and genome assignments server

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Galactosyltransferase LgtC family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   Nucleotide-diphospho-sugar transferases [ 53447]
Superfamily:   Nucleotide-diphospho-sugar transferases [ 53448] (19)
Family:   Galactosyltransferase LgtC [ 53458]


Family statistics
Genomes (23) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 23 155 2
Proteins 23 155 2


Arabidopsis Plant Ontology (AP)

(
show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)sepal0Least InformativeDirect
Plant ANatomical entity (PAN)megasporophyll0Least InformativeDirect
Plant ANatomical entity (PAN)petal0Least InformativeDirect
Plant ANatomical entity (PAN)collective leaf structure0Least InformativeDirect
Plant ANatomical entity (PAN)gynoecium0Least InformativeDirect
Plant ANatomical entity (PAN)plant embryo0Least InformativeDirect
Plant ANatomical entity (PAN)stalk0.0001358Least InformativeDirect
Plant ANatomical entity (PAN)androecium0.05585Least InformativeInherited
Plant ANatomical entity (PAN)microsporophyll0.7267Least InformativeInherited
Plant ANatomical entity (PAN)vascular system0.0000000001993InformativeDirect
Plant ANatomical entity (PAN)portion of ground tissue0.0000002042InformativeDirect
Plant ANatomical entity (PAN)trichome0.000000007315Highly InformativeDirect
Plant ANatomical entity (PAN)filament0.00003096Highly InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Transferases0Least InformativeDirect
Enzyme Commission (EC)Glycosyltransferases0InformativeDirect

Document: EC annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 74 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Nucleotide-diphospho-sugar transferases domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · Internal database links ]