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glucose-1-phosphate thymidylyltransferase family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   Nucleotide-diphospho-sugar transferases [ 53447]
Superfamily:   Nucleotide-diphospho-sugar transferases [ 53448] (19)
Family:   glucose-1-phosphate thymidylyltransferase [ 53464] (3)

Family statistics
Genomes (1,562) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 3,148 10,705 12
Proteins 3,145 10,705 12

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)primary metabolic process0.00021413.946e-10Least InformativeDirect
Biological Process (BP)cellular aromatic compound metabolic process0.29590.9301Least InformativeInherited
Biological Process (BP)nitrogen compound metabolic process0.39720.9975Least InformativeInherited
Biological Process (BP)single-organism metabolic process0.56620.3691Least InformativeInherited
Biological Process (BP)organic cyclic compound metabolic process0.3530.9722Least InformativeInherited
Biological Process (BP)biosynthetic process0.0014357.819e-06Least InformativeInherited
Biological Process (BP)macromolecule metabolic process0.018920.001337Least InformativeInherited
Biological Process (BP)heterocycle metabolic process0.28170.9043Least InformativeInherited
Biological Process (BP)carbohydrate metabolic process1.602e-060Moderately InformativeDirect
Biological Process (BP)cellular macromolecule biosynthetic process5.25e-091.632e-09Moderately InformativeDirect
Biological Process (BP)nucleobase-containing small molecule metabolic process0.00031083.026e-05Moderately InformativeDirect
Biological Process (BP)phosphate-containing compound metabolic process0.0031950.004305Moderately InformativeInherited
Biological Process (BP)organophosphate metabolic process0.013450.02736Moderately InformativeInherited
Biological Process (BP)polysaccharide metabolic process7.051e-120InformativeDirect
Biological Process (BP)carbohydrate biosynthetic process4.879e-120InformativeDirect
Biological Process (BP)cellular carbohydrate metabolic process4.703e-100InformativeDirect
Biological Process (BP)monosaccharide metabolic process0.56711InformativeInherited
Biological Process (BP)cellular polysaccharide biosynthetic process1.133e-140Highly InformativeDirect
Molecular Function (MF)binding0.0016140.4814Least InformativeInherited
Molecular Function (MF)transferase activity, transferring phosphorus-containing groups3.379e-110Moderately InformativeDirect
Molecular Function (MF)ion binding3.087e-071.154e-05Moderately InformativeDirect
Molecular Function (MF)nucleotidyltransferase activity00InformativeDirect
Molecular Function (MF)magnesium ion binding6.332e-132.18e-13Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 7.819e-06 Least Informative Direct
Biological Process (BP) primary metabolic process 3.946e-10 Least Informative Direct
Biological Process (BP) single-organism metabolic process 0.3691 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 0.9301 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 0.9975 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 0.9722 Least Informative Inherited
Biological Process (BP) macromolecule metabolic process 0.001337 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 0.9043 Least Informative Inherited
Biological Process (BP) carbohydrate metabolic process 0 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 1.632e-09 Moderately Informative Direct
Biological Process (BP) nucleobase-containing small molecule metabolic process 3.026e-05 Moderately Informative Direct
Biological Process (BP) phosphate-containing compound metabolic process 0.004305 Moderately Informative Inherited
Biological Process (BP) organophosphate metabolic process 0.02736 Moderately Informative Inherited
Biological Process (BP) polysaccharide metabolic process 0 Informative Direct
Biological Process (BP) carbohydrate biosynthetic process 0 Informative Direct
Biological Process (BP) cellular carbohydrate metabolic process 0 Informative Direct
Biological Process (BP) oxidation-reduction process 0.0007762 Informative Direct
Biological Process (BP) monosaccharide metabolic process 1 Informative Inherited
Biological Process (BP) cellular polysaccharide biosynthetic process 0 Highly Informative Direct
Molecular Function (MF) binding 0.4814 Least Informative Inherited
Molecular Function (MF) transferase activity, transferring phosphorus-containing groups 0 Moderately Informative Direct
Molecular Function (MF) ion binding 1.154e-05 Moderately Informative Direct
Molecular Function (MF) nucleotidyltransferase activity 0 Informative Direct
Molecular Function (MF) magnesium ion binding 2.18e-13 Highly Informative Direct
Molecular Function (MF) adenylyltransferase activity 0.03746 Highly Informative Inherited

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Nucleotidyltransferases0Least InformativeDirect

Document: EC annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)plant cell0Least InformativeDirect
Plant ANatomical entity (PAN)root0Least InformativeDirect
Plant ANatomical entity (PAN)stamen0Least InformativeDirect
Plant ANatomical entity (PAN)carpel0Least InformativeDirect
Plant ANatomical entity (PAN)guard cell1.253e-05Moderately InformativeDirect
Plant ANatomical entity (PAN)fruit0InformativeDirect
Plant ANatomical entity (PAN)portion of ground tissue1.738e-09InformativeDirect
Plant ANatomical entity (PAN)vascular system4.47e-08InformativeDirect
Plant ANatomical entity (PAN)chlorenchyma1.507e-14Highly InformativeDirect
Plant ANatomical entity (PAN)phloem1.722e-13Highly InformativeDirect
Plant ANatomical entity (PAN)ground tissue cell3.733e-13Highly InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Transferases0Least InformativeDirect
Enzyme Commission (EC)Nucleotidyltransferases0Moderately InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processCarbohydrate metabolism0Moderately InformativeDirect
Biological processLipopolysaccharide biosynthesis7.76e-10Highly InformativeDirect
Cellular componentPlastid1.172e-06Moderately InformativeDirect
Cellular componentChloroplast4.69e-07InformativeDirect
DomainTransit peptide8.869e-09Moderately InformativeDirect
Molecular functionNucleotide-binding0Least InformativeDirect
Post-translational modificationTransferase0Least InformativeDirect
Post-translational modificationNucleotidyltransferase0InformativeDirect

Document: KW annotation of SCOP domains

UniProtKB UniPathway (UP)

(show details)
UP termFDR (all)SDUP levelAnnotation (direct or inherited)
UniPathway (UP)glycan metabolism0Moderately InformativeDirect
UniPathway (UP)cellular component biogenesis0.8396Moderately InformativeInherited
UniPathway (UP)glycan biosynthesis0InformativeDirect
UniPathway (UP)glycolipid biosynthesis1InformativeInherited
UniPathway (UP)glycogen biosynthesis0Highly InformativeDirect
UniPathway (UP)cell surface structure biogenesis1.662e-08Highly InformativeDirect

Document: UP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.
   
Superfamily level     Family level

Alignments of sequences to 43 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Nucleotide-diphospho-sugar transferases domain.
   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) · Internal database links ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.