SUPERFAMILY 1.75 HMM library and genome assignments server

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glucose-1-phosphate thymidylyltransferase family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   Nucleotide-diphospho-sugar transferases [ 53447]
Superfamily:   Nucleotide-diphospho-sugar transferases [ 53448] (19)
Family:   glucose-1-phosphate thymidylyltransferase [ 53464] (3)


Family statistics
Genomes (2,084) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 4,066 24,548 12
Proteins 4,063 24,546 12


Gene Ontology (high-quality)

(
show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)macromolecule metabolic process0.00020330.00005425Least InformativeDirect
Biological Process (BP)primary metabolic process0.00000070970.00000000001872Least InformativeDirect
Biological Process (BP)single-organism metabolic process0.00027840.0000000001788Least InformativeDirect
Biological Process (BP)single-organism cellular process0.019010.001185Least InformativeInherited
Biological Process (BP)biosynthetic process0.0034510.0000007395Least InformativeInherited
Biological Process (BP)cellular aromatic compound metabolic process0.23081Least InformativeInherited
Biological Process (BP)cellular nitrogen compound metabolic process0.3161Least InformativeInherited
Biological Process (BP)heterocycle metabolic process0.2261Least InformativeInherited
Biological Process (BP)organic cyclic compound metabolic process0.41761Least InformativeInherited
Biological Process (BP)carbohydrate metabolic process0.000000000021610Moderately InformativeDirect
Biological Process (BP)cellular macromolecule biosynthetic process0.0000000000058760.0000000000003209Moderately InformativeDirect
Biological Process (BP)carbohydrate derivative metabolic process0.00023370.00806Moderately InformativeInherited
Biological Process (BP)polysaccharide metabolic process00InformativeDirect
Biological Process (BP)carbohydrate biosynthetic process0.000000000087670InformativeDirect
Biological Process (BP)cellular carbohydrate metabolic process0.0000000000045430InformativeDirect
Biological Process (BP)nucleotide-sugar metabolic process0.0000000024080.000000000327Highly InformativeDirect
Molecular Function (MF)transferase activity0.0000000000018730.00000000009854Least InformativeDirect
Molecular Function (MF)binding0.091641Least InformativeInherited
Molecular Function (MF)transferase activity, transferring phosphorus-containing groups00Moderately InformativeDirect
Molecular Function (MF)metal ion binding0.00000024180.0000002331Moderately InformativeDirect
Molecular Function (MF)magnesium ion binding0.00016720.000013InformativeDirect
Molecular Function (MF)nucleotidyltransferase activity00InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 0.0000007395 Least Informative Direct
Biological Process (BP) macromolecule metabolic process 0.00005425 Least Informative Direct
Biological Process (BP) primary metabolic process 0.00000000001872 Least Informative Direct
Biological Process (BP) single-organism metabolic process 0.0000000001788 Least Informative Direct
Biological Process (BP) single-organism cellular process 0.001185 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) cellular nitrogen compound metabolic process 1 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 1 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) carbohydrate metabolic process 0 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 0.0000000000003209 Moderately Informative Direct
Biological Process (BP) carbohydrate derivative metabolic process 0.00806 Moderately Informative Inherited
Biological Process (BP) polysaccharide metabolic process 0 Informative Direct
Biological Process (BP) energy derivation by oxidation of organic compounds 0.00004067 Informative Direct
Biological Process (BP) carbohydrate biosynthetic process 0 Informative Direct
Biological Process (BP) cellular carbohydrate metabolic process 0 Informative Direct
Biological Process (BP) energy reserve metabolic process 0.00000000006195 Highly Informative Direct
Biological Process (BP) nucleotide-sugar metabolic process 0.000000000327 Highly Informative Direct
Biological Process (BP) cellular glucan metabolic process 0.4151 Highly Informative Inherited
Molecular Function (MF) transferase activity 0.00000000009854 Least Informative Direct
Molecular Function (MF) binding 1 Least Informative Inherited
Molecular Function (MF) transferase activity, transferring phosphorus-containing groups 0 Moderately Informative Direct
Molecular Function (MF) metal ion binding 0.0000002331 Moderately Informative Direct
Molecular Function (MF) magnesium ion binding 0.000013 Informative Direct
Molecular Function (MF) nucleotidyltransferase activity 0 Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Nucleotidyltransferases0Least InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processCarbohydrate metabolism0Moderately InformativeDirect
Biological processLipopolysaccharide biosynthesis0.0000000009384Highly InformativeDirect
Cellular componentPlastid0.000000004999Moderately InformativeDirect
Cellular componentChloroplast0.000000001617InformativeDirect
DomainTransit peptide0.000000000007076Moderately InformativeDirect
Molecular functionNucleotide-binding0Least InformativeDirect
Post-translational modificationTransferase0Least InformativeDirect
Post-translational modificationNucleotidyltransferase0InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 43 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Nucleotide-diphospho-sugar transferases domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]