SUPERFAMILY 1.75 HMM library and genome assignments server

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glucose-1-phosphate thymidylyltransferase family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   Nucleotide-diphospho-sugar transferases [ 53447]
Superfamily:   Nucleotide-diphospho-sugar transferases [ 53448] (19)
Family:   glucose-1-phosphate thymidylyltransferase [ 53464] (3)


Family statistics
Genomes (2,082) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 4,063 19,820 12
Proteins 4,060 19,820 12


Gene Ontology (high-quality)

(
show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)primary metabolic process0.00000073370.00000000002238Least InformativeDirect
Biological Process (BP)single-organism metabolic process0.00027540.0000000001992Least InformativeDirect
Biological Process (BP)macromolecule metabolic process0.0022870.0005943Least InformativeInherited
Biological Process (BP)single-organism cellular process0.040750.00785Least InformativeInherited
Biological Process (BP)biosynthetic process0.0041650.000001012Least InformativeInherited
Biological Process (BP)cellular aromatic compound metabolic process0.24031Least InformativeInherited
Biological Process (BP)cellular nitrogen compound metabolic process0.36361Least InformativeInherited
Biological Process (BP)heterocycle metabolic process0.23481Least InformativeInherited
Biological Process (BP)organic cyclic compound metabolic process0.40691Least InformativeInherited
Biological Process (BP)carbohydrate metabolic process0.000000000024720Moderately InformativeDirect
Biological Process (BP)cellular macromolecule biosynthetic process0.00000039640.00000000002211Moderately InformativeDirect
Biological Process (BP)carbohydrate derivative metabolic process0.00021720.007415Moderately InformativeInherited
Biological Process (BP)polysaccharide metabolic process0.0000000000052010InformativeDirect
Biological Process (BP)carbohydrate biosynthetic process0.0000000054050InformativeDirect
Biological Process (BP)cellular carbohydrate metabolic process0.00000000024340InformativeDirect
Biological Process (BP)nucleotide-sugar metabolic process0.0000000021440.0000000002836Highly InformativeDirect
Molecular Function (MF)transferase activity0.000000000093320.0000000002994Least InformativeDirect
Molecular Function (MF)binding0.11291Least InformativeInherited
Molecular Function (MF)transferase activity, transferring phosphorus-containing groups00Moderately InformativeDirect
Molecular Function (MF)cation binding0.0000044390.000003919Moderately InformativeDirect
Molecular Function (MF)magnesium ion binding0.00046350.00005169InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 0.000001012 Least Informative Direct
Biological Process (BP) macromolecule metabolic process 0.0005943 Least Informative Direct
Biological Process (BP) primary metabolic process 0.00000000002238 Least Informative Direct
Biological Process (BP) single-organism metabolic process 0.0000000001992 Least Informative Direct
Biological Process (BP) single-organism cellular process 0.00785 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) cellular nitrogen compound metabolic process 1 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 1 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) carbohydrate metabolic process 0 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 0.00000000002211 Moderately Informative Direct
Biological Process (BP) carbohydrate derivative metabolic process 0.007415 Moderately Informative Inherited
Biological Process (BP) polysaccharide metabolic process 0 Informative Direct
Biological Process (BP) energy derivation by oxidation of organic compounds 0.00002391 Informative Direct
Biological Process (BP) carbohydrate biosynthetic process 0 Informative Direct
Biological Process (BP) cellular carbohydrate metabolic process 0 Informative Direct
Biological Process (BP) energy reserve metabolic process 0.00000000003663 Highly Informative Direct
Biological Process (BP) nucleotide-sugar metabolic process 0.0000000002836 Highly Informative Direct
Molecular Function (MF) transferase activity 0.0000000002994 Least Informative Direct
Molecular Function (MF) binding 1 Least Informative Inherited
Molecular Function (MF) transferase activity, transferring phosphorus-containing groups 0 Moderately Informative Direct
Molecular Function (MF) cation binding 0.000003919 Moderately Informative Direct
Molecular Function (MF) magnesium ion binding 0.00005169 Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Nucleotidyltransferases0Least InformativeDirect

Document: EC annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)root0Least InformativeDirect
Plant ANatomical entity (PAN)vascular leaf0Least InformativeDirect
Plant ANatomical entity (PAN)megasporophyll0Least InformativeDirect
Plant ANatomical entity (PAN)microsporophyll0Least InformativeDirect
Plant ANatomical entity (PAN)inflorescence0Least InformativeDirect
Plant ANatomical entity (PAN)androecium0Least InformativeDirect
Plant ANatomical entity (PAN)gynoecium0Least InformativeDirect
Plant ANatomical entity (PAN)fruit0InformativeDirect
Plant ANatomical entity (PAN)portion of ground tissue0.0000000003788InformativeDirect
Plant ANatomical entity (PAN)vascular system0.00000002165InformativeDirect
Plant ANatomical entity (PAN)ground tissue cell0.00000000000000709Highly InformativeDirect
Plant ANatomical entity (PAN)chlorenchyma0.000000000000009555Highly InformativeDirect
Plant ANatomical entity (PAN)phloem0.0000000000001417Highly InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Transferases0Least InformativeDirect
Enzyme Commission (EC)Nucleotidyltransferases0Moderately InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processCarbohydrate metabolism0Moderately InformativeDirect
Biological processLipopolysaccharide biosynthesis0.0000000007415Highly InformativeDirect
Cellular componentPlastid0.0000005173Moderately InformativeDirect
Cellular componentChloroplast0.0000002015InformativeDirect
DomainTransit peptide0.000000006519Moderately InformativeDirect
Molecular functionNucleotide-binding0Least InformativeDirect
Post-translational modificationTransferase0Least InformativeDirect
Post-translational modificationNucleotidyltransferase0InformativeDirect

Document: KW annotation of SCOP domains

UniProtKB UniPathway (UP)

(show details)
UP termFDR (all)SDUP levelAnnotation (direct or inherited)
UniPathway (UP)glycan metabolism0Moderately InformativeDirect
UniPathway (UP)cellular component biogenesis0.6713Moderately InformativeInherited
UniPathway (UP)glycan biosynthesis0InformativeDirect
UniPathway (UP)glycolipid biosynthesis1InformativeInherited
UniPathway (UP)glycogen biosynthesis0Highly InformativeDirect
UniPathway (UP)cell surface structure biogenesis0.00000000003489Highly InformativeDirect

Document: UP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 43 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Nucleotide-diphospho-sugar transferases domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) · Internal database links ]