SUPERFAMILY 1.75 HMM library and genome assignments server


glucose-1-phosphate thymidylyltransferase family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   Nucleotide-diphospho-sugar transferases [ 53447]
Superfamily:   Nucleotide-diphospho-sugar transferases [ 53448] (19)
Family:   glucose-1-phosphate thymidylyltransferase [ 53464] (3)


Family statistics
Genomes (2,082) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 4,063 19,820 12
Proteins 4,060 19,820 12


Gene Ontology (high-quality)

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show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)biosynthetic process0.00049312.364e-06Least InformativeDirect
Biological Process (BP)primary metabolic process3.39e-055.812e-11Least InformativeDirect
Biological Process (BP)cellular aromatic compound metabolic process0.43770.9958Least InformativeInherited
Biological Process (BP)nitrogen compound metabolic process0.53671Least InformativeInherited
Biological Process (BP)single-organism metabolic process0.17570.1688Least InformativeInherited
Biological Process (BP)organic cyclic compound metabolic process0.51431Least InformativeInherited
Biological Process (BP)macromolecule metabolic process0.053030.004357Least InformativeInherited
Biological Process (BP)heterocycle metabolic process0.42580.9823Least InformativeInherited
Biological Process (BP)carbohydrate metabolic process2.652e-070Moderately InformativeDirect
Biological Process (BP)cellular macromolecule biosynthetic process1.49e-052.291e-08Moderately InformativeDirect
Biological Process (BP)nucleobase-containing small molecule metabolic process0.00049997.913e-05Moderately InformativeDirect
Biological Process (BP)phosphate-containing compound metabolic process0.0049240.006022Moderately InformativeInherited
Biological Process (BP)organophosphate metabolic process0.028440.05809Moderately InformativeInherited
Biological Process (BP)polysaccharide metabolic process4.18e-080InformativeDirect
Biological Process (BP)carbohydrate biosynthetic process2.469e-070InformativeDirect
Biological Process (BP)cellular carbohydrate metabolic process9.635e-090InformativeDirect
Biological Process (BP)monosaccharide metabolic process0.73551InformativeInherited
Biological Process (BP)cellular polysaccharide biosynthetic process1.7e-140Highly InformativeDirect
Molecular Function (MF)transferase activity4.118e-091.877e-15Least InformativeDirect
Molecular Function (MF)binding0.0056260.596Least InformativeInherited
Molecular Function (MF)transferase activity, transferring phosphorus-containing groups7.35e-130Moderately InformativeDirect
Molecular Function (MF)cation binding1.524e-088.317e-08Moderately InformativeDirect
Molecular Function (MF)magnesium ion binding0.00069164.831e-05InformativeDirect
Molecular Function (MF)nucleotidyltransferase activity00InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 2.364e-06 Least Informative Direct
Biological Process (BP) primary metabolic process 5.812e-11 Least Informative Direct
Biological Process (BP) cellular aromatic compound metabolic process 0.9958 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 1 Least Informative Inherited
Biological Process (BP) single-organism metabolic process 0.1688 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) macromolecule metabolic process 0.004357 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 0.9823 Least Informative Inherited
Biological Process (BP) carbohydrate metabolic process 0 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 2.291e-08 Moderately Informative Direct
Biological Process (BP) nucleobase-containing small molecule metabolic process 7.913e-05 Moderately Informative Direct
Biological Process (BP) phosphate-containing compound metabolic process 0.006022 Moderately Informative Inherited
Biological Process (BP) organophosphate metabolic process 0.05809 Moderately Informative Inherited
Biological Process (BP) polysaccharide metabolic process 0 Informative Direct
Biological Process (BP) carbohydrate biosynthetic process 0 Informative Direct
Biological Process (BP) cellular carbohydrate metabolic process 0 Informative Direct
Biological Process (BP) monosaccharide metabolic process 1 Informative Inherited
Biological Process (BP) cellular polysaccharide biosynthetic process 0 Highly Informative Direct
Molecular Function (MF) transferase activity 1.877e-15 Least Informative Direct
Molecular Function (MF) binding 0.596 Least Informative Inherited
Molecular Function (MF) transferase activity, transferring phosphorus-containing groups 0 Moderately Informative Direct
Molecular Function (MF) cation binding 8.317e-08 Moderately Informative Direct
Molecular Function (MF) magnesium ion binding 4.831e-05 Informative Direct
Molecular Function (MF) nucleotidyltransferase activity 0 Informative Direct
Molecular Function (MF) adenylyltransferase activity 0.04432 Highly Informative Inherited

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Nucleotidyltransferases0Least InformativeDirect

Document: EC annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)root0Least InformativeDirect
Plant ANatomical entity (PAN)vascular leaf0Least InformativeDirect
Plant ANatomical entity (PAN)megasporophyll0Least InformativeDirect
Plant ANatomical entity (PAN)microsporophyll0Least InformativeDirect
Plant ANatomical entity (PAN)inflorescence0Least InformativeDirect
Plant ANatomical entity (PAN)androecium0Least InformativeDirect
Plant ANatomical entity (PAN)gynoecium0Least InformativeDirect
Plant ANatomical entity (PAN)fruit0InformativeDirect
Plant ANatomical entity (PAN)portion of ground tissue3.776e-10InformativeDirect
Plant ANatomical entity (PAN)vascular system2.078e-08InformativeDirect
Plant ANatomical entity (PAN)ground tissue cell7.088e-15Highly InformativeDirect
Plant ANatomical entity (PAN)chlorenchyma9.553e-15Highly InformativeDirect
Plant ANatomical entity (PAN)phloem1.078e-13Highly InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Transferases0Least InformativeDirect
Enzyme Commission (EC)Nucleotidyltransferases0Moderately InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processCarbohydrate metabolism0Moderately InformativeDirect
Biological processLipopolysaccharide biosynthesis7.845e-10Highly InformativeDirect
Cellular componentPlastid1.475e-06Moderately InformativeDirect
Cellular componentChloroplast5.967e-07InformativeDirect
DomainTransit peptide1.727e-08Moderately InformativeDirect
Molecular functionNucleotide-binding0Least InformativeDirect
Post-translational modificationTransferase0Least InformativeDirect
Post-translational modificationNucleotidyltransferase0InformativeDirect

Document: KW annotation of SCOP domains

UniProtKB UniPathway (UP)

(show details)
UP termFDR (all)SDUP levelAnnotation (direct or inherited)
UniPathway (UP)glycan metabolism0Moderately InformativeDirect
UniPathway (UP)cellular component biogenesis0.6644Moderately InformativeInherited
UniPathway (UP)glycan biosynthesis0InformativeDirect
UniPathway (UP)glycolipid biosynthesis1InformativeInherited
UniPathway (UP)glycogen biosynthesis0Highly InformativeDirect
UniPathway (UP)cell surface structure biogenesis2.704e-11Highly InformativeDirect

Document: UP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 43 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Nucleotide-diphospho-sugar transferases domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) · Internal database links ]