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Thiamin biosynthesis kinases family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   Ribokinase-like [ 53612] (3)
Superfamily:   Ribokinase-like [ 53613] (5)
Family:   Thiamin biosynthesis kinases [ 53620] (2)


Family statistics
Genomes (2,374) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 4,095 21,951 6
Proteins 4,094 21,946 6


Gene Ontology (high-quality)

(
show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)cellular aromatic compound metabolic process0.00000000011620.000000000000008864Least InformativeDirect
Biological Process (BP)biosynthetic process0.00000000059010.000000000000005999Least InformativeDirect
Biological Process (BP)cellular nitrogen compound metabolic process0.00000000048930.00000000000006792Least InformativeDirect
Biological Process (BP)single-organism metabolic process0.000000025830.000000000001489Least InformativeDirect
Biological Process (BP)single-organism cellular process0.0000022140.000002796Least InformativeDirect
Biological Process (BP)heterocycle metabolic process0.00000000010910.000000000000005999Least InformativeDirect
Biological Process (BP)organic cyclic compound metabolic process0.00000000038410.00000000000003627Least InformativeDirect
Biological Process (BP)organonitrogen compound metabolic process0.00000002220.00000000004759Least InformativeDirect
Biological Process (BP)heterocycle biosynthetic process0.000000000000012870Moderately InformativeDirect
Biological Process (BP)aromatic compound biosynthetic process0.0000000000000022720Moderately InformativeDirect
Biological Process (BP)cellular nitrogen compound biosynthetic process0.00000000000017370Moderately InformativeDirect
Biological Process (BP)small molecule biosynthetic process0.0000000000000087080Moderately InformativeDirect
Biological Process (BP)organic cyclic compound biosynthetic process0.000000000000042240Moderately InformativeDirect
Biological Process (BP)vitamin metabolic process00InformativeDirect
Biological Process (BP)sulfur compound biosynthetic process00InformativeDirect
Biological Process (BP)pyrimidine-containing compound metabolic process00InformativeDirect
Biological Process (BP)thiamine-containing compound metabolic process00Highly InformativeDirect
Molecular Function (MF)transferase activity0.00000000020440.000000000000006837Least InformativeDirect
Molecular Function (MF)transferase activity, transferring phosphorus-containing groups0.0000000000000011410Moderately InformativeDirect
Molecular Function (MF)kinase activity00InformativeDirect
Molecular Function (MF)phosphotransferase activity, alcohol group as acceptor0.68390.8264InformativeInherited

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) cellular aromatic compound metabolic process 0.000000000000008864 Least Informative Direct
Biological Process (BP) biosynthetic process 0.000000000000005999 Least Informative Direct
Biological Process (BP) cellular nitrogen compound metabolic process 0.00000000000006792 Least Informative Direct
Biological Process (BP) single-organism metabolic process 0.000000000001489 Least Informative Direct
Biological Process (BP) single-organism cellular process 0.000002796 Least Informative Direct
Biological Process (BP) heterocycle metabolic process 0.000000000000005999 Least Informative Direct
Biological Process (BP) organic cyclic compound metabolic process 0.00000000000003627 Least Informative Direct
Biological Process (BP) organonitrogen compound metabolic process 0.00000000004759 Least Informative Direct
Biological Process (BP) heterocycle biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) aromatic compound biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) cellular nitrogen compound biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) small molecule biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) organic cyclic compound biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) vitamin metabolic process 0 Informative Direct
Biological Process (BP) sulfur compound biosynthetic process 0 Informative Direct
Biological Process (BP) pyrimidine-containing compound metabolic process 0 Informative Direct
Biological Process (BP) thiamine-containing compound metabolic process 0 Highly Informative Direct
Molecular Function (MF) transferase activity 0.000000000000006837 Least Informative Direct
Molecular Function (MF) transferase activity, transferring phosphorus-containing groups 0 Moderately Informative Direct
Molecular Function (MF) kinase activity 0 Informative Direct
Molecular Function (MF) phosphotransferase activity, alcohol group as acceptor 0.8264 Informative Inherited

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Phosphotransferases with an alcohol group as accep0Moderately InformativeDirect
Enzyme Commission (EC)Transferring alkyl or aryl groups, other than meth1Moderately InformativeInherited
Enzyme Commission (EC)Phosphotransferases with a phosphate group as acce1InformativeInherited

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processThiamine biosynthesis0Highly InformativeDirect
Molecular functionMetal-binding0Least InformativeDirect
Molecular functionNucleotide-binding0Least InformativeDirect
Molecular functionMagnesium0Moderately InformativeDirect
Post-translational modificationTransferase0Least InformativeDirect
Post-translational modificationKinase0Moderately InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 25 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Ribokinase-like domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]