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Ribosomal proteins S24e, L23 and L15e superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Ribosomal proteins S24e, L23 and L15e [ 54188]
Superfamily:   Ribosomal proteins S24e, L23 and L15e [ 54189] (3)
Families:   L23p [ 54190]
  L15e [ 54193]
  Ribosomal protein S24e [ 117786]


Superfamily statistics
Genomes (3,230) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 6,667 28,688 24
Proteins 6,647 28,636 24


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)biosynthetic process0.000021480.000000002061Least InformativeDirect
Biological Process (BP)cellular nitrogen compound metabolic process0.000011630.00000002122Least InformativeDirect
Biological Process (BP)macromolecule metabolic process0.000053410.00001999Least InformativeDirect
Biological Process (BP)organonitrogen compound metabolic process0.00073830.000006062Least InformativeDirect
Biological Process (BP)cellular component organization or biogenesis0.0026590.1855Least InformativeInherited
Biological Process (BP)primary metabolic process0.021060.002513Least InformativeInherited
Biological Process (BP)peptide metabolic process00Moderately InformativeDirect
Biological Process (BP)gene expression0.0000000000021910.000000000000003734Moderately InformativeDirect
Biological Process (BP)cellular macromolecule biosynthetic process0.0000000000002630Moderately InformativeDirect
Biological Process (BP)amide biosynthetic process00Moderately InformativeDirect
Biological Process (BP)macromolecular complex subunit organization0.0000018220.00002013Moderately InformativeDirect
Biological Process (BP)cellular component assembly0.010970.002998Moderately InformativeInherited
Biological Process (BP)organelle organization0.0084250.02832Moderately InformativeInherited
Biological Process (BP)ribosome biogenesis0.00000000002040.00000000009673InformativeDirect
Biological Process (BP)organelle assembly0.0000000067380.0000003854InformativeDirect
Biological Process (BP)ribonucleoprotein complex subunit organization0.00000052020.0000009095InformativeDirect
Biological Process (BP)ribosome assembly0.0000059260.000000008324Highly InformativeDirect
Molecular Function (MF)binding0.79881Least InformativeInherited
Molecular Function (MF)structural molecule activity00Moderately InformativeDirect
Molecular Function (MF)nucleic acid binding0.000018720.01843Moderately InformativeInherited
Molecular Function (MF)RNA binding0.00000033010.00003654InformativeDirect
Cellular Component (CC)non-membrane-bounded organelle00Least InformativeDirect
Cellular Component (CC)intracellular organelle part0.0000000056080.00000006861Least InformativeDirect
Cellular Component (CC)intracellular membrane-bounded organelle11Least InformativeInherited
Cellular Component (CC)cytoplasmic part0.0047590.000002738Least InformativeInherited
Cellular Component (CC)ribosome00Moderately InformativeDirect
Cellular Component (CC)cytosolic part0.00000000000011430Moderately InformativeDirect
Cellular Component (CC)intracellular organelle lumen0.000035880.002691Moderately InformativeInherited
Cellular Component (CC)mitochondrial ribosome00InformativeDirect
Cellular Component (CC)large ribosomal subunit0.0072310.01304InformativeInherited
Cellular Component (CC)mitochondrial large ribosomal subunit00Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 0.000000002061 Least Informative Direct
Biological Process (BP) cellular nitrogen compound metabolic process 0.00000002122 Least Informative Direct
Biological Process (BP) macromolecule metabolic process 0.00001999 Least Informative Direct
Biological Process (BP) organonitrogen compound metabolic process 0.000006062 Least Informative Direct
Biological Process (BP) cellular component organization or biogenesis 0.1855 Least Informative Inherited
Biological Process (BP) primary metabolic process 0.002513 Least Informative Inherited
Biological Process (BP) peptide metabolic process 0 Moderately Informative Direct
Biological Process (BP) gene expression 0.000000000000003734 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) amide biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) macromolecular complex subunit organization 0.00002013 Moderately Informative Direct
Biological Process (BP) cellular component assembly 0.002998 Moderately Informative Inherited
Biological Process (BP) organelle organization 0.02832 Moderately Informative Inherited
Biological Process (BP) ribosome biogenesis 0.00000000009673 Informative Direct
Biological Process (BP) organelle assembly 0.0000003854 Informative Direct
Biological Process (BP) ribonucleoprotein complex subunit organization 0.0000009095 Informative Direct
Biological Process (BP) ribosome assembly 0.000000008324 Highly Informative Direct
Molecular Function (MF) binding 1 Least Informative Inherited
Molecular Function (MF) structural molecule activity 0 Moderately Informative Direct
Molecular Function (MF) nucleic acid binding 0.01843 Moderately Informative Inherited
Molecular Function (MF) RNA binding 0.00003654 Informative Direct
Cellular Component (CC) non-membrane-bounded organelle 0 Least Informative Direct
Cellular Component (CC) cytoplasmic part 0.000002738 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.00000006861 Least Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) ribosome 0 Moderately Informative Direct
Cellular Component (CC) cytosolic part 0 Moderately Informative Direct
Cellular Component (CC) intracellular organelle lumen 0.002691 Moderately Informative Inherited
Cellular Component (CC) mitochondrial ribosome 0 Informative Direct
Cellular Component (CC) large ribosomal subunit 0.01304 Informative Inherited
Cellular Component (CC) mitochondrial large ribosomal subunit 0 Highly Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Cellular componentPlastid0Moderately InformativeDirect
Post-translational modificationRNA-binding0Moderately InformativeDirect
Post-translational modificationRibonucleoprotein0Moderately InformativeDirect
Post-translational modificationrRNA-binding0InformativeDirect
Post-translational modificationRibosomal protein0InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR012678 SSF54189 Protein matches
Abstract

Both the L23 and L15e ribosomal proteins have a core domain consisting of a beta-(alpha)-beta-alpha-beta(2) structure folded into three layers, alpha/beta/alpha, where the beta-sheets are antiparallel.


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 11 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Ribosomal proteins S24e, L23 and L15e domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 11 hidden Markov models representing the Ribosomal proteins S24e, L23 and L15e superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]