SUPERFAMILY 1.75 HMM library and genome assignments server

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Translational machinery components family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Ribosomal protein S5 domain 2-like [ 54210]
Superfamily:   Ribosomal protein S5 domain 2-like [ 54211] (12)
Family:   Translational machinery components [ 54212] (4)


Family statistics
Genomes (3,207) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 8,643 58,349 25
Proteins 8,641 58,345 25


Human Phenotype (HP)

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show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of nervous system physiology0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of nervous system morphology0Least InformativeDirect

Document: HP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)larval arrest0Least InformativeDirect
Worm Phenotype (WP)cell physiology variant0.0001449Least InformativeDirect
Worm Phenotype (WP)organism metabolism processing variant0.005303Least InformativeInherited
Worm Phenotype (WP)cell development variant0.04453Least InformativeInherited
Worm Phenotype (WP)pattern of transgene expression variant0.00001957Moderately InformativeDirect
Worm Phenotype (WP)germ cell differentiation variant0.0003192Moderately InformativeDirect
Worm Phenotype (WP)early embryonic lethal0.0005072Moderately InformativeDirect
Worm Phenotype (WP)germ cell development variant0.002266Moderately InformativeInherited
Worm Phenotype (WP)cell type morphology variant0.01133Moderately InformativeInherited
Worm Phenotype (WP)cell division variant0.02807Moderately InformativeInherited
Worm Phenotype (WP)cell cycle variant0.03204Moderately InformativeInherited
Worm Phenotype (WP)reproductive system morphology variant0.08657Moderately InformativeInherited
Worm Phenotype (WP)cell death variant0.2338Moderately InformativeInherited
Worm Phenotype (WP)pachytene progression during oogenesis variant0.000002374InformativeDirect
Worm Phenotype (WP)diplotene progression during oogenesis variant0.000002374InformativeDirect
Worm Phenotype (WP)germ cell compartment expansion variant0.00001107InformativeDirect
Worm Phenotype (WP)rachis morphology variant0.00001188InformativeDirect
Worm Phenotype (WP)oocyte morphology variant0.00007962InformativeDirect
Worm Phenotype (WP)oocytes small0.00000004195Highly InformativeDirect
Worm Phenotype (WP)nuclear appearance variant0.00001413Highly InformativeDirect
Worm Phenotype (WP)apoptosis reduced0.00009329Highly InformativeDirect
Worm Phenotype (WP)early larval arrest0.0003586Highly InformativeDirect

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details)
YP termFDR (all)SDYP levelAnnotation (direct or inherited)
Yeast Phenotype (YP)resistance to chemicals0Least InformativeDirect

Document: YP annotation of SCOP domains

Fly Phenotype (FP)

(show details)
FP termFDR (all)SDFP levelAnnotation (direct or inherited)
Fly Phenotype (FP)increased mortality0Least InformativeDirect

Document: FP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)urogenital system0Least InformativeDirect
Xenopus ANatomical entity (XAN)trunk0Least InformativeDirect
Xenopus ANatomical entity (XAN)cavitated compound organ0Least InformativeDirect
Xenopus ANatomical entity (XAN)tissue0.2059Least InformativeInherited
Xenopus ANatomical entity (XAN)anatomical cluster0.5958Least InformativeInherited
Xenopus ANatomical entity (XAN)testis0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)musculoskeletal system0.01875Moderately InformativeInherited
Xenopus ANatomical entity (XAN)alimentary system0.4432Moderately InformativeInherited
Xenopus ANatomical entity (XAN)viscus0.6611Moderately InformativeInherited
Xenopus ANatomical entity (XAN)muscle0.0005923InformativeDirect
Xenopus ANatomical entity (XAN)pancreas0.0002248Highly InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant structure DEvelopment stage (PDE)4 leaf senescence stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)E expanded cotyledon stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)F mature embryo stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)C globular stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)D bilateral stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.12 twelve leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.08 eight leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.02 two leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.10 ten leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.04 four leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.06 six leaves visible stage0Least InformativeDirect

Document: AP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Human Phenotype (HP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Phenotype (FP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 86 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Ribosomal protein S5 domain 2-like domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Human Phenotype (HP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Phenotype (FP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Internal database links ]