SUPERFAMILY 1.75 HMM library and genome assignments server

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Ubiquitin-related family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   beta-Grasp (ubiquitin-like) [ 54235] (14)
Superfamily:   Ubiquitin-like [ 54236] (8)
Family:   Ubiquitin-related [ 54237] (38)


Family statistics
Genomes (507) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 10,615 25,149 92
Proteins 6,376 15,449 91


Enzyme Commission (EC)

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show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Acting on peptide bonds (peptide hydrolases)0.0000003546Least InformativeDirect
Enzyme Commission (EC)Acting on ester bonds0.06747Least InformativeInherited
Enzyme Commission (EC)Phosphoric monoester hydrolases0.000000000005677Moderately InformativeDirect
Enzyme Commission (EC)Phosphoprotein phosphatase0InformativeDirect
Enzyme Commission (EC)Ubiquitinyl hydrolase 10InformativeDirect

Document: EC annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism metabolism processing variant0.001314Least InformativeInherited
Worm Phenotype (WP)cell development variant0.2655Least InformativeInherited
Worm Phenotype (WP)protein protein interaction variant0.000000006025Moderately InformativeDirect
Worm Phenotype (WP)germ cell development variant0.04179Moderately InformativeInherited
Worm Phenotype (WP)germ cell differentiation variant0.07226Moderately InformativeInherited
Worm Phenotype (WP)no oocytes0.0004752Highly InformativeDirect
Worm Phenotype (WP)nuclear appearance variant0.01307Highly InformativeInherited
Worm Phenotype (WP)protein aggregation induced paralysis1Highly InformativeInherited

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details)
YP termFDR (all)SDYP levelAnnotation (direct or inherited)
Yeast Phenotype (YP)metabolism and growth0.5552Least InformativeInherited
Yeast Phenotype (YP)protein/peptide accumulation0.0009954Highly InformativeDirect

Document: YP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)adult0.5091Least InformativeInherited
Fly Anatomy (FA)organ system subdivision0.5594Least InformativeInherited
Fly Anatomy (FA)nervous system0.5889Least InformativeInherited
Fly Anatomy (FA)larva0.7207Least InformativeInherited
Fly Anatomy (FA)somatic cell0.928Least InformativeInherited
Fly Anatomy (FA)central nervous system0.1261Moderately InformativeInherited
Fly Anatomy (FA)neuron0.4592Moderately InformativeInherited
Fly Anatomy (FA)interneuron0.03148InformativeInherited
Fly Anatomy (FA)extrinsic neuron0.001222Highly InformativeInherited

Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details)
ZA termFDR (all)SDZA levelAnnotation (direct or inherited)
Zebrafish Anatomy (ZA)organism subdivision0Least InformativeDirect
Zebrafish Anatomy (ZA)anatomical cluster0Least InformativeDirect
Zebrafish Anatomy (ZA)head0Moderately InformativeDirect

Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)anatomical entity in vitro0.0000081InformativeDirect

Document: XA annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolases0.000003163Least InformativeDirect
Enzyme Commission (EC)Transferases0.01731Least InformativeInherited
Enzyme Commission (EC)Acyltransferases0.000000003636Moderately InformativeDirect
Enzyme Commission (EC)Acting on peptide bonds (peptidases)0.000002598Moderately InformativeDirect
Enzyme Commission (EC)Phosphotransferases with an alcohol group as acceptor0.0001036Moderately InformativeDirect
Enzyme Commission (EC)Acting on ester bonds0.0869Moderately InformativeInherited
Enzyme Commission (EC)Aminoacyltransferases0InformativeDirect
Enzyme Commission (EC)Phosphoric monoester hydrolases0.000000004096InformativeDirect
Enzyme Commission (EC)Ubiquitinyl hydrolase 10Highly InformativeDirect
Enzyme Commission (EC)Protein-serine/threonine phosphatase0.000000000000001463Highly InformativeDirect

Document: EC annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Enzyme Commission (EC) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 160 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Ubiquitin-like domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Enzyme Commission (EC) · Internal database links ]