SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Ribosomal protein L16p/L10e superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   alpha/beta-Hammerhead [ 54664] (5)
Superfamily:   Ribosomal protein L16p/L10e [ 54686] (2)
Families:   Ribosomal protein L10e [ 54687]
  Ribosomal protein L16p [ 117888]


Superfamily statistics
Genomes (3,243) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 4,315 26,022 16
Proteins 4,313 26,004 16


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Molecular Function (MF)structural molecule activity0.0000028990Moderately InformativeDirect
Cellular Component (CC)cytoplasmic part0.00031410.00005366Least InformativeDirect
Cellular Component (CC)intracellular membrane-bounded organelle0.42810.7089Least InformativeInherited
Cellular Component (CC)plastid0.0000044230.0004543InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 0.000005067 Least Informative Direct
Biological Process (BP) cellular nitrogen compound metabolic process 0.0000199 Least Informative Direct
Biological Process (BP) organonitrogen compound metabolic process 0.000556 Least Informative Direct
Biological Process (BP) primary metabolic process 0.02013 Least Informative Inherited
Biological Process (BP) macromolecule metabolic process 0.001125 Least Informative Inherited
Biological Process (BP) peptide metabolic process 0.00000000000001079 Moderately Informative Direct
Biological Process (BP) gene expression 0.000000002063 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 0.000000000414 Moderately Informative Direct
Biological Process (BP) amide biosynthetic process 0.000000000000007296 Moderately Informative Direct
Biological Process (BP) mitochondrial gene expression 0.00002923 Highly Informative Direct
Molecular Function (MF) structural molecule activity 0 Moderately Informative Direct
Cellular Component (CC) non-membrane-bounded organelle 0.000002847 Least Informative Direct
Cellular Component (CC) cytoplasmic part 0.00005366 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.0026 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 0.7089 Least Informative Inherited
Cellular Component (CC) ribosome 0 Moderately Informative Direct
Cellular Component (CC) cytosolic part 0.0000003933 Moderately Informative Direct
Cellular Component (CC) intracellular organelle lumen 0.06036 Moderately Informative Inherited
Cellular Component (CC) mitochondrial ribosome 0.0000001391 Informative Direct
Cellular Component (CC) plastid 0.0004543 Informative Direct
Cellular Component (CC) large ribosomal subunit 0 Informative Direct
Cellular Component (CC) mitochondrial large ribosomal subunit 0.000000002071 Highly Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Cellular componentPlastid0Moderately InformativeDirect
Post-translational modificationRibonucleoprotein0Moderately InformativeDirect
Post-translational modificationRNA-binding0Moderately InformativeDirect
Post-translational modificationRibosomal protein0InformativeDirect
Post-translational modificationrRNA-binding0InformativeDirect
Post-translational modificationtRNA-binding0Highly InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 7 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Ribosomal protein L16p/L10e domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 7 hidden Markov models representing the Ribosomal protein L16p/L10e superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]