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Ribosomal L11/L12e N-terminal domain superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Ribosomal L11/L12e N-terminal domain [ 54746]
Superfamily:   Ribosomal L11/L12e N-terminal domain [ 54747]
Families:   Ribosomal L11/L12e N-terminal domain [ 54748] (2)


Superfamily statistics
Genomes (3,229) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 4,304 19,494 22
Proteins 4,303 19,486 22


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 0.000007282 Least Informative Direct
Biological Process (BP) cellular nitrogen compound metabolic process 0.00002613 Least Informative Direct
Biological Process (BP) organonitrogen compound metabolic process 0.0005936 Least Informative Direct
Biological Process (BP) cellular component organization or biogenesis 0.02167 Least Informative Inherited
Biological Process (BP) primary metabolic process 0.01796 Least Informative Inherited
Biological Process (BP) macromolecule metabolic process 0.001154 Least Informative Inherited
Biological Process (BP) peptide metabolic process 0.00000000000007466 Moderately Informative Direct
Biological Process (BP) gene expression 0.000000005162 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 0.000000001167 Moderately Informative Direct
Biological Process (BP) amide biosynthetic process 0.00000000000005222 Moderately Informative Direct
Biological Process (BP) macromolecular complex subunit organization 0.00006313 Moderately Informative Direct
Biological Process (BP) cellular component assembly 0.0552 Moderately Informative Inherited
Biological Process (BP) organelle organization 0.05445 Moderately Informative Inherited
Biological Process (BP) ribosome biogenesis 0.0000000002557 Informative Direct
Biological Process (BP) organelle assembly 0.00001031 Informative Direct
Biological Process (BP) ribonucleoprotein complex subunit organization 0.0001132 Informative Direct
Biological Process (BP) ribosome assembly 0.00002865 Highly Informative Direct
Biological Process (BP) mitochondrial gene expression 0.000197 Highly Informative Direct
Molecular Function (MF) binding 0.3414 Least Informative Inherited
Molecular Function (MF) structural molecule activity 0 Moderately Informative Direct
Molecular Function (MF) nucleic acid binding 0.01839 Moderately Informative Inherited
Molecular Function (MF) RNA binding 0.0002126 Informative Direct
Cellular Component (CC) non-membrane-bounded organelle 0.00000000001503 Least Informative Direct
Cellular Component (CC) cytoplasmic part 0.00005767 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.000005659 Least Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) ribosome 0 Moderately Informative Direct
Cellular Component (CC) cytosolic part 0.000000002272 Moderately Informative Direct
Cellular Component (CC) intracellular organelle lumen 0.003039 Moderately Informative Inherited
Cellular Component (CC) mitochondrial ribosome 0.0000001391 Informative Direct
Cellular Component (CC) large ribosomal subunit 0 Informative Direct
Cellular Component (CC) mitochondrial large ribosomal subunit 0.000000002071 Highly Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Post-translational modificationRibonucleoprotein0Moderately InformativeDirect
Post-translational modificationRNA-binding0Moderately InformativeDirect
Post-translational modificationrRNA-binding0InformativeDirect
Post-translational modificationRibosomal protein0InformativeDirect
Post-translational modificationMethylation0Moderately InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR000911 SSF54747 Protein matches
Abstract

Ribosomal protein L11 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L11 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [PubMed2167467], groups bacteria, plant chloroplast, read algal chloroplast, cyanelle and archaeabacterial L11; and mammalian, plant and yeast L12 (YL15). L11 is a protein of 140 to 165 amino-acid residues. In E. coli, the C-terminal half of L11 has been shown [PubMed2483975] to be in an extended and loosely folded conformation and is likely to be buried within the ribosomal structure.


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 5 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Ribosomal L11/L12e N-terminal domain domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 5 hidden Markov models representing the Ribosomal L11/L12e N-terminal domain superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]