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Ribosomal protein L22 superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Ribosomal protein L22 [ 54842]
Superfamily:   Ribosomal protein L22 [ 54843]
Families:   Ribosomal protein L22 [ 54844]


Superfamily statistics
Genomes (3,239) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 4,482 23,340 12
Proteins 4,472 23,323 12


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)cellular component organization or biogenesis0.00029960.07239Least InformativeInherited
Biological Process (BP)ribosome biogenesis0.0000000053610.000000001453InformativeDirect
Molecular Function (MF)structural molecule activity0.0000028990.00000000000002419Moderately InformativeDirect
Cellular Component (CC)cytoplasmic part0.0036280.00005366Least InformativeInherited
Cellular Component (CC)intracellular organelle part0.013050.0026Least InformativeInherited
Cellular Component (CC)non-membrane-bounded organelle0.020460.0000003646Least InformativeInherited
Cellular Component (CC)cytosolic part0.000069320.0000003933Moderately InformativeDirect
Cellular Component (CC)ribosome0.000078430Moderately InformativeDirect
Cellular Component (CC)large ribosomal subunit0.00000019020InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 0.00007549 Least Informative Direct
Biological Process (BP) cellular nitrogen compound metabolic process 0.0002497 Least Informative Direct
Biological Process (BP) cellular component organization or biogenesis 0.07239 Least Informative Inherited
Biological Process (BP) organonitrogen compound metabolic process 0.004374 Least Informative Inherited
Biological Process (BP) primary metabolic process 0.08387 Least Informative Inherited
Biological Process (BP) macromolecule metabolic process 0.007936 Least Informative Inherited
Biological Process (BP) amide biosynthetic process 0.0000000000008943 Moderately Informative Direct
Biological Process (BP) peptide metabolic process 0.000000000001272 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 0.00000001682 Moderately Informative Direct
Biological Process (BP) gene expression 0.00000007174 Moderately Informative Direct
Biological Process (BP) ribosome biogenesis 0.000000001453 Informative Direct
Biological Process (BP) mitochondrial gene expression 0.000197 Highly Informative Direct
Molecular Function (MF) structural molecule activity 0.00000000000002419 Moderately Informative Direct
Cellular Component (CC) cytoplasmic part 0.00005366 Least Informative Direct
Cellular Component (CC) non-membrane-bounded organelle 0.0000003646 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.0026 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 0.7969 Least Informative Inherited
Cellular Component (CC) cytosolic part 0.0000003933 Moderately Informative Direct
Cellular Component (CC) ribosome 0 Moderately Informative Direct
Cellular Component (CC) intracellular organelle lumen 0.00858 Moderately Informative Inherited
Cellular Component (CC) large ribosomal subunit 0 Informative Direct
Cellular Component (CC) mitochondrial ribosome 0 Informative Direct
Cellular Component (CC) mitochondrial large ribosomal subunit 0 Highly Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Cellular componentPlastid0Moderately InformativeDirect
Post-translational modificationRNA-binding0Moderately InformativeDirect
Post-translational modificationRibonucleoprotein0Moderately InformativeDirect
Post-translational modificationRibosomal protein0InformativeDirect
Post-translational modificationrRNA-binding0InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR001063 SSF54843 Protein matches
Abstract

Ribosomal protein L22 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L22 is known to bind 23S rRNA. It belongs to a family of ribosomal proteins which includes: bacterial L22; algal and plant chloroplast L22 (in legumes L22 is encoded in the nucleus instead of the chloroplast); cyanelle L22; archaebacterial L22; mammalian L17; plant L17 and yeast YL17.


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 4 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Ribosomal protein L22 domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 4 hidden Markov models representing the Ribosomal protein L22 superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]