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Ribosomal protein S6 superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Ferredoxin-like [ 54861] (59)
Superfamily:   Ribosomal protein S6 [ 54995]
Families:   Ribosomal protein S6 [ 54996]


Superfamily statistics
Genomes (3,002) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 3,237 17,235 13
Proteins 3,231 17,226 13


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)biosynthetic process0.0000023230.0000007161Least InformativeDirect
Biological Process (BP)cellular nitrogen compound metabolic process0.0000016060.000002269Least InformativeDirect
Biological Process (BP)macromolecule metabolic process0.0000040680.00007842Least InformativeDirect
Biological Process (BP)organonitrogen compound metabolic process0.000021930.00004143Least InformativeDirect
Biological Process (BP)primary metabolic process0.00024950.001235Least InformativeInherited
Biological Process (BP)peptide metabolic process0.00000000000079950.00000000000009369Moderately InformativeDirect
Biological Process (BP)gene expression0.00000000032120.000000001232Moderately InformativeDirect
Biological Process (BP)cellular macromolecule biosynthetic process0.00000000010730.0000000003427Moderately InformativeDirect
Biological Process (BP)amide biosynthetic process0.0000000000026870.00000000000006985Moderately InformativeDirect
Biological Process (BP)mitochondrial gene expression0.0000078740.00000005188Highly InformativeDirect
Molecular Function (MF)structural molecule activity0.0000000000000013860Moderately InformativeDirect
Cellular Component (CC)non-membrane-bounded organelle0.00000001970.00001344Least InformativeDirect
Cellular Component (CC)cytoplasmic part0.00081350.00001015Least InformativeDirect
Cellular Component (CC)intracellular organelle part0.0000064090.00007601Least InformativeDirect
Cellular Component (CC)intracellular membrane-bounded organelle0.35810.5213Least InformativeInherited
Cellular Component (CC)ribosome0.00000000000019340.000000000000003036Moderately InformativeDirect
Cellular Component (CC)intracellular organelle lumen0.0000066070.0001567Moderately InformativeDirect
Cellular Component (CC)mitochondrial ribosome0.0000000000000026290InformativeDirect
Cellular Component (CC)small ribosomal subunit00InformativeDirect
Cellular Component (CC)mitochondrial small ribosomal subunit00Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 0.0000007161 Least Informative Direct
Biological Process (BP) cellular nitrogen compound metabolic process 0.000002269 Least Informative Direct
Biological Process (BP) macromolecule metabolic process 0.00007842 Least Informative Direct
Biological Process (BP) organonitrogen compound metabolic process 0.00004143 Least Informative Direct
Biological Process (BP) primary metabolic process 0.001235 Least Informative Inherited
Biological Process (BP) peptide metabolic process 0.00000000000009369 Moderately Informative Direct
Biological Process (BP) gene expression 0.000000001232 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 0.0000000003427 Moderately Informative Direct
Biological Process (BP) amide biosynthetic process 0.00000000000006985 Moderately Informative Direct
Biological Process (BP) mitochondrial gene expression 0.00000005188 Highly Informative Direct
Molecular Function (MF) structural molecule activity 0 Moderately Informative Direct
Cellular Component (CC) non-membrane-bounded organelle 0.00001344 Least Informative Direct
Cellular Component (CC) cytoplasmic part 0.00001015 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.00007601 Least Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 0.5213 Least Informative Inherited
Cellular Component (CC) ribosome 0.000000000000003036 Moderately Informative Direct
Cellular Component (CC) intracellular organelle lumen 0.0001567 Moderately Informative Direct
Cellular Component (CC) mitochondrial ribosome 0 Informative Direct
Cellular Component (CC) small ribosomal subunit 0 Informative Direct
Cellular Component (CC) mitochondrial small ribosomal subunit 0 Highly Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Post-translational modificationRibonucleoprotein0Moderately InformativeDirect
Post-translational modificationRNA-binding0Moderately InformativeDirect
Post-translational modificationRibosomal protein0InformativeDirect
Post-translational modificationrRNA-binding0InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR000529 SSF54995 Protein matches
Abstract

Ribosomal protein S6 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S6 is known to bind together with S18 to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups bacterial, red algal chloroplast and cyanelle S6 ribosomal proteins.


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 4 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Ribosomal protein S6 domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 4 hidden Markov models representing the Ribosomal protein S6 superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]