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Ribosomal protein S8 superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Ribosomal protein S8 [ 56046]
Superfamily:   Ribosomal protein S8 [ 56047]
Families:   Ribosomal protein S8 [ 56048]


Superfamily statistics
Genomes (3,237) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 4,211 23,366 12
Proteins 4,194 23,325 12


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)cellular nitrogen compound metabolic process0.0000095470.00003294Least InformativeDirect
Biological Process (BP)biosynthetic process0.000015230.00001005Least InformativeDirect
Biological Process (BP)organonitrogen compound metabolic process0.00024170.0006083Least InformativeDirect
Biological Process (BP)cellular component organization or biogenesis0.0091170.1005Least InformativeInherited
Biological Process (BP)primary metabolic process0.0041110.01536Least InformativeInherited
Biological Process (BP)macromolecule metabolic process0.000030590.001137Least InformativeInherited
Biological Process (BP)peptide metabolic process0.000000000000038810.0000000000004467Moderately InformativeDirect
Biological Process (BP)amide biosynthetic process0.00000000000020290.0000000000003218Moderately InformativeDirect
Biological Process (BP)cellular macromolecule biosynthetic process0.000000000030520.000000003152Moderately InformativeDirect
Biological Process (BP)gene expression0.0000000001340.00000001238Moderately InformativeDirect
Biological Process (BP)macromolecular complex subunit organization0.000083540.0002454Moderately InformativeDirect
Biological Process (BP)cellular component assembly0.018130.005328Moderately InformativeInherited
Biological Process (BP)organelle organization0.00070150.01401Moderately InformativeInherited
Biological Process (BP)ribosome biogenesis0.0000000020890.00000000361InformativeDirect
Biological Process (BP)ribonucleoprotein complex subunit organization0.0000000056320.00000002224InformativeDirect
Biological Process (BP)organelle assembly0.00000045070.000004471InformativeDirect
Biological Process (BP)ribosome assembly0.00036310.00000515Highly InformativeDirect
Molecular Function (MF)structural molecule activity00Moderately InformativeDirect
Cellular Component (CC)non-membrane-bounded organelle0.000000015230.0000008246Least InformativeDirect
Cellular Component (CC)cytoplasmic part0.000000021670.00000001948Least InformativeDirect
Cellular Component (CC)intracellular organelle part0.0000012730.00005475Least InformativeDirect
Cellular Component (CC)ribosome00Moderately InformativeDirect
Cellular Component (CC)cytosolic part0.00000000000018090.00000000000001166Moderately InformativeDirect
Cellular Component (CC)small ribosomal subunit00InformativeDirect
Cellular Component (CC)cytosolic ribosome0.035450.0006093InformativeInherited
Cellular Component (CC)cytosolic small ribosomal subunit0.0000095610.00000003487Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) cellular nitrogen compound metabolic process 0.00003294 Least Informative Direct
Biological Process (BP) biosynthetic process 0.00001005 Least Informative Direct
Biological Process (BP) organonitrogen compound metabolic process 0.0006083 Least Informative Direct
Biological Process (BP) cellular component organization or biogenesis 0.1005 Least Informative Inherited
Biological Process (BP) primary metabolic process 0.01536 Least Informative Inherited
Biological Process (BP) macromolecule metabolic process 0.001137 Least Informative Inherited
Biological Process (BP) peptide metabolic process 0.0000000000004467 Moderately Informative Direct
Biological Process (BP) amide biosynthetic process 0.0000000000003218 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 0.000000003152 Moderately Informative Direct
Biological Process (BP) gene expression 0.00000001238 Moderately Informative Direct
Biological Process (BP) macromolecular complex subunit organization 0.0002454 Moderately Informative Direct
Biological Process (BP) cellular component assembly 0.005328 Moderately Informative Inherited
Biological Process (BP) organelle organization 0.01401 Moderately Informative Inherited
Biological Process (BP) ribosome biogenesis 0.00000000361 Informative Direct
Biological Process (BP) ribonucleoprotein complex subunit organization 0.00000002224 Informative Direct
Biological Process (BP) organelle assembly 0.000004471 Informative Direct
Biological Process (BP) ribosome assembly 0.00000515 Highly Informative Direct
Molecular Function (MF) structural molecule activity 0 Moderately Informative Direct
Cellular Component (CC) non-membrane-bounded organelle 0.0000008246 Least Informative Direct
Cellular Component (CC) cytoplasmic part 0.00000001948 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.00005475 Least Informative Direct
Cellular Component (CC) ribosome 0 Moderately Informative Direct
Cellular Component (CC) cytosolic part 0.00000000000001166 Moderately Informative Direct
Cellular Component (CC) small ribosomal subunit 0 Informative Direct
Cellular Component (CC) cytosolic ribosome 0.0006093 Informative Direct
Cellular Component (CC) cytosolic small ribosomal subunit 0.00000003487 Highly Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Cellular componentPlastid0Moderately InformativeDirect
Post-translational modificationRibonucleoprotein0Moderately InformativeDirect
Post-translational modificationRNA-binding0Moderately InformativeDirect
Post-translational modificationRibosomal protein0InformativeDirect
Post-translational modificationrRNA-binding0InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR000630 SSF56047 Protein matches
Abstract

Ribosomal protein S8 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S8 is known to bind directly to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups eubacterial, algal and plant chloroplast, cyanelle, archaebacterial and Marchantia polymorpha mitochondrial S8; mammalian and plant S15A; and yeast S22 (S24) ribosomal proteins.


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 5 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Ribosomal protein S8 domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 5 hidden Markov models representing the Ribosomal protein S8 superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]