SUPERFAMILY 1.75 HMM library and genome assignments server

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Pumilio repeat family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   alpha-alpha superhelix [ 48370] (24)
Superfamily:   ARM repeat [ 48371] (23)
Family:   Pumilio repeat [ 63611]


Family statistics
Genomes (494) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 2,105 5,679 2
Proteins 2,094 5,641 2


Worm Phenotype (WP)

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show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)cell development variant0.00006127Least InformativeDirect
Worm Phenotype (WP)cell physiology variant0.0003078Least InformativeDirect
Worm Phenotype (WP)organism metabolism processing variant0.06724Least InformativeInherited
Worm Phenotype (WP)germ cell development variant0.000004348Moderately InformativeDirect
Worm Phenotype (WP)early embryonic lethal0.0001591Moderately InformativeDirect
Worm Phenotype (WP)organ system development variant0.0004229Moderately InformativeDirect
Worm Phenotype (WP)protein expression variant0.005054Moderately InformativeInherited
Worm Phenotype (WP)cell organization biogenesis variant0.04269Moderately InformativeInherited
Worm Phenotype (WP)cell division variant0.07009Moderately InformativeInherited
Worm Phenotype (WP)germ cell differentiation variant0.07226Moderately InformativeInherited
Worm Phenotype (WP)cell type morphology variant0.5338Moderately InformativeInherited
Worm Phenotype (WP)oocyte morphology variant0.0000006442InformativeDirect
Worm Phenotype (WP)nuclear positioning variant0.000002248InformativeDirect
Worm Phenotype (WP)cytokinesis variant emb0.00001274InformativeDirect
Worm Phenotype (WP)hermaphrodite physiology variant0.00002973InformativeDirect
Worm Phenotype (WP)embryonic cell organization biogenesis variant0.00004224InformativeDirect
Worm Phenotype (WP)germ cell physiology variant0.00007974InformativeDirect
Worm Phenotype (WP)endocytic transport defect0.0001054InformativeDirect
Worm Phenotype (WP)cell number increased0.0008827InformativeDirect
Worm Phenotype (WP)cell fate specification variant0.0206InformativeInherited
Worm Phenotype (WP)vulva development variant0.1285InformativeInherited
Worm Phenotype (WP)pattern protein expression variant0.1674InformativeInherited
Worm Phenotype (WP)embryonic arrest0.00000002337Highly InformativeDirect
Worm Phenotype (WP)nucleus defective early emb0.0000007966Highly InformativeDirect
Worm Phenotype (WP)multiple nuclei0.0000008309Highly InformativeDirect
Worm Phenotype (WP)hatching variant0.00001163Highly InformativeDirect
Worm Phenotype (WP)developmental morphology variant0.00001303Highly InformativeDirect
Worm Phenotype (WP)sexually dimorphic development variant0.00005188Highly InformativeDirect
Worm Phenotype (WP)embryonic cell morphology variant0.00007369Highly InformativeDirect
Worm Phenotype (WP)multivulva0.0001221Highly InformativeDirect
Worm Phenotype (WP)no oocytes0.000312Highly InformativeDirect
Worm Phenotype (WP)nuclear appearance variant0.003699Highly InformativeInherited

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details) Document: YP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)embryo0Least InformativeDirect
Xenopus ANatomical entity (XAN)urogenital system0Least InformativeDirect
Xenopus ANatomical entity (XAN)nervous system0Least InformativeDirect
Xenopus ANatomical entity (XAN)head0Least InformativeDirect
Xenopus ANatomical entity (XAN)trunk0Least InformativeDirect
Xenopus ANatomical entity (XAN)tissue0Least InformativeDirect
Xenopus ANatomical entity (XAN)anatomical cluster0Least InformativeDirect
Xenopus ANatomical entity (XAN)cavitated compound organ0Least InformativeDirect
Xenopus ANatomical entity (XAN)brain0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)alimentary system0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)testis0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)viscus0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)endomesoderm0InformativeDirect
Xenopus DEvelopment stage (XDE)unspecified stage0Moderately InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details) Document: AP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Worm Phenotype (WP) · Yeast Phenotype (YP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 75 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a ARM repeat domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Worm Phenotype (WP) · Yeast Phenotype (YP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Internal database links ]