SUPERFAMILY 1.75 HMM library and genome assignments server

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Pumilio repeat family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   alpha-alpha superhelix [ 48370] (24)
Superfamily:   ARM repeat [ 48371] (23)
Family:   Pumilio repeat [ 63611]


Family statistics
Genomes (494) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 2,105 5,679 2
Proteins 2,094 5,641 2


Worm Phenotype (WP)

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show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)cell development variant0.00006083Least InformativeDirect
Worm Phenotype (WP)cell physiology variant0.0003067Least InformativeDirect
Worm Phenotype (WP)organism metabolism processing variant0.0668Least InformativeInherited
Worm Phenotype (WP)germ cell development variant0.00000434Moderately InformativeDirect
Worm Phenotype (WP)early embryonic lethal0.0001578Moderately InformativeDirect
Worm Phenotype (WP)organ system development variant0.0004216Moderately InformativeDirect
Worm Phenotype (WP)protein expression variant0.005045Moderately InformativeInherited
Worm Phenotype (WP)cell organization biogenesis variant0.04291Moderately InformativeInherited
Worm Phenotype (WP)cell division variant0.07022Moderately InformativeInherited
Worm Phenotype (WP)germ cell differentiation variant0.0726Moderately InformativeInherited
Worm Phenotype (WP)cell type morphology variant0.5343Moderately InformativeInherited
Worm Phenotype (WP)oocyte morphology variant0.0000006488InformativeDirect
Worm Phenotype (WP)nuclear positioning variant0.000002306InformativeDirect
Worm Phenotype (WP)cytokinesis variant emb0.00001265InformativeDirect
Worm Phenotype (WP)hermaphrodite physiology variant0.0000295InformativeDirect
Worm Phenotype (WP)embryonic cell organization biogenesis variant0.00004196InformativeDirect
Worm Phenotype (WP)germ cell physiology variant0.00007911InformativeDirect
Worm Phenotype (WP)endocytic transport defect0.0001046InformativeDirect
Worm Phenotype (WP)cell number increased0.0008782InformativeDirect
Worm Phenotype (WP)cell fate specification variant0.02055InformativeInherited
Worm Phenotype (WP)vulva development variant0.1278InformativeInherited
Worm Phenotype (WP)pattern protein expression variant0.1674InformativeInherited
Worm Phenotype (WP)embryonic arrest0.00000002314Highly InformativeDirect
Worm Phenotype (WP)nucleus defective early emb0.0000007912Highly InformativeDirect
Worm Phenotype (WP)multiple nuclei0.0000008252Highly InformativeDirect
Worm Phenotype (WP)hatching variant0.00001157Highly InformativeDirect
Worm Phenotype (WP)developmental morphology variant0.00001296Highly InformativeDirect
Worm Phenotype (WP)sexually dimorphic development variant0.00005159Highly InformativeDirect
Worm Phenotype (WP)embryonic cell morphology variant0.00007342Highly InformativeDirect
Worm Phenotype (WP)multivulva0.0001214Highly InformativeDirect
Worm Phenotype (WP)no oocytes0.0003104Highly InformativeDirect
Worm Phenotype (WP)nuclear appearance variant0.003686Highly InformativeInherited

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details) Document: YP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)embryo0Least InformativeDirect
Xenopus ANatomical entity (XAN)urogenital system0Least InformativeDirect
Xenopus ANatomical entity (XAN)nervous system0Least InformativeDirect
Xenopus ANatomical entity (XAN)head0Least InformativeDirect
Xenopus ANatomical entity (XAN)trunk0Least InformativeDirect
Xenopus ANatomical entity (XAN)tissue0Least InformativeDirect
Xenopus ANatomical entity (XAN)anatomical cluster0Least InformativeDirect
Xenopus ANatomical entity (XAN)cavitated compound organ0Least InformativeDirect
Xenopus ANatomical entity (XAN)brain0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)alimentary system0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)testis0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)viscus0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)endomesoderm0InformativeDirect
Xenopus DEvelopment stage (XDE)unspecified stage0Moderately InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details) Document: AP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Worm Phenotype (WP) · Yeast Phenotype (YP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 75 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a ARM repeat domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Worm Phenotype (WP) · Yeast Phenotype (YP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Internal database links ]