SUPERFAMILY 1.75 HMM library and genome assignments server


Calcium-dependent phosphotriesterase superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (174)
Fold:   6-bladed beta-propeller [ 50938] (11)
Superfamily:   Calcium-dependent phosphotriesterase [ 63829] (3)
Families:   SGL-like [ 63830] (3)
  Serum paraoxonase/arylesterase 1, PON1 [ 101895]
  All0351-like [ 159252]


Superfamily statistics
Genomes (1,878) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 10,855 20,990 6
Proteins 9,538 17,162 6


Functional annotation
General category Metabolism
Detailed category Other enzymes

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)single-organism cellular process0.87621Least InformativeInherited
Biological Process (BP)biosynthetic process0.28870.4128Least InformativeInherited
Biological Process (BP)regulation of metabolic process0.0083571Least InformativeInherited
Biological Process (BP)regulation of cellular process0.05691Least InformativeInherited
Biological Process (BP)single-organism metabolic process0.0083610.1279Least InformativeInherited
Biological Process (BP)positive regulation of molecular function1.754e-080.0005545Moderately InformativeDirect
Biological Process (BP)regulation of signal transduction1.289e-050.1684Moderately InformativeInherited
Biological Process (BP)regulation of catalytic activity6.285e-050.02736Moderately InformativeInherited
Biological Process (BP)regulation of phosphate metabolic process10.01124Moderately InformativeInherited
Biological Process (BP)regulation of nucleobase-containing compound metabolic process0.0058150.691Moderately InformativeInherited
Biological Process (BP)single-organism biosynthetic process0.00161.527e-05Moderately InformativeInherited
Biological Process (BP)carbohydrate metabolic process2.701e-050.01225Moderately InformativeInherited
Biological Process (BP)homeostatic process0.00097480.04812Moderately InformativeInherited
Biological Process (BP)vitamin metabolic process8.367e-082.633e-07InformativeDirect
Biological Process (BP)regulation of nucleoside metabolic process2.106e-126.578e-06InformativeDirect
Biological Process (BP)carbohydrate biosynthetic process8.12e-098.899e-06InformativeDirect
Biological Process (BP)regulation of nucleotide catabolic process1.725e-125.228e-06InformativeDirect
Biological Process (BP)positive regulation of hydrolase activity4.296e-120.000169InformativeDirect
Biological Process (BP)cation homeostasis2.006e-102.329e-05InformativeDirect
Biological Process (BP)cellular chemical homeostasis3.044e-102.232e-05InformativeDirect
Biological Process (BP)regulation of purine nucleotide metabolic process3.303e-113.815e-05InformativeDirect
Biological Process (BP)cellular calcium ion homeostasis3.14e-151.407e-08Highly InformativeDirect
Biological Process (BP)monosaccharide biosynthetic process3.217e-072.013e-07Highly InformativeDirect
Biological Process (BP)regulation of calcium-mediated signaling00Highly InformativeDirect
Molecular Function (MF)hydrolase activity1.096e-080.0001021Least InformativeDirect
Molecular Function (MF)binding0.20321Least InformativeInherited
Molecular Function (MF)hydrolase activity, acting on ester bonds08.929e-07Moderately InformativeDirect
Molecular Function (MF)cation binding3.529e-123.951e-05Moderately InformativeDirect
Molecular Function (MF)transition metal ion binding0.10620.2191InformativeInherited
Molecular Function (MF)phosphatase activity0.53970.295InformativeInherited
Molecular Function (MF)calcium ion binding00Highly InformativeDirect
Molecular Function (MF)carboxylic ester hydrolase activity00Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) single-organism cellular process 1 Least Informative Inherited
Biological Process (BP) biosynthetic process 0.4128 Least Informative Inherited
Biological Process (BP) regulation of metabolic process 1 Least Informative Inherited
Biological Process (BP) regulation of cellular process 1 Least Informative Inherited
Biological Process (BP) single-organism metabolic process 0.1279 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 1 Least Informative Inherited
Biological Process (BP) positive regulation of molecular function 0.0005545 Moderately Informative Direct
Biological Process (BP) single-organism biosynthetic process 1.527e-05 Moderately Informative Direct
Biological Process (BP) regulation of signal transduction 0.1684 Moderately Informative Inherited
Biological Process (BP) regulation of catalytic activity 0.02736 Moderately Informative Inherited
Biological Process (BP) regulation of phosphate metabolic process 0.01124 Moderately Informative Inherited
Biological Process (BP) regulation of nucleobase-containing compound metabolic process 0.691 Moderately Informative Inherited
Biological Process (BP) carbohydrate metabolic process 0.01225 Moderately Informative Inherited
Biological Process (BP) homeostatic process 0.04812 Moderately Informative Inherited
Biological Process (BP) vitamin metabolic process 2.633e-07 Informative Direct
Biological Process (BP) regulation of nucleoside metabolic process 6.578e-06 Informative Direct
Biological Process (BP) carbohydrate biosynthetic process 8.899e-06 Informative Direct
Biological Process (BP) regulation of nucleotide catabolic process 5.228e-06 Informative Direct
Biological Process (BP) positive regulation of hydrolase activity 0.000169 Informative Direct
Biological Process (BP) cation homeostasis 2.329e-05 Informative Direct
Biological Process (BP) cellular chemical homeostasis 2.232e-05 Informative Direct
Biological Process (BP) regulation of purine nucleotide metabolic process 3.815e-05 Informative Direct
Biological Process (BP) cellular amide metabolic process 0.002379 Informative Inherited
Biological Process (BP) cellular calcium ion homeostasis 1.407e-08 Highly Informative Direct
Biological Process (BP) monosaccharide biosynthetic process 2.013e-07 Highly Informative Direct
Biological Process (BP) regulation of calcium-mediated signaling 0 Highly Informative Direct
Molecular Function (MF) hydrolase activity 0.0001021 Least Informative Direct
Molecular Function (MF) binding 1 Least Informative Inherited
Molecular Function (MF) hydrolase activity, acting on ester bonds 8.929e-07 Moderately Informative Direct
Molecular Function (MF) lyase activity 1.178e-07 Moderately Informative Direct
Molecular Function (MF) cation binding 3.951e-05 Moderately Informative Direct
Molecular Function (MF) oxidoreductase activity 1 Moderately Informative Inherited
Molecular Function (MF) transition metal ion binding 0.2191 Informative Inherited
Molecular Function (MF) peptidase activity 0.2032 Informative Inherited
Molecular Function (MF) phosphatase activity 0.295 Informative Inherited
Molecular Function (MF) endopeptidase activity 1.199e-06 Highly Informative Direct
Molecular Function (MF) monooxygenase activity 0.0001215 Highly Informative Direct
Molecular Function (MF) calcium ion binding 0 Highly Informative Direct
Molecular Function (MF) oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxyge 0.0006881 Highly Informative Direct
Molecular Function (MF) carboxylic ester hydrolase activity 0 Highly Informative Direct
Cellular Component (CC) cytoplasmic part 0.8692 Least Informative Inherited
Cellular Component (CC) cell surface 6.578e-06 Informative Direct
Cellular Component (CC) lipid particle 1.687e-13 Highly Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Acting on ester bonds0Least InformativeDirect
Enzyme Commission (EC)Lyases0.00446Least InformativeInherited
Enzyme Commission (EC)Carboxylic ester hydrolases0Moderately InformativeDirect
Enzyme Commission (EC)Carbon-nitrogen lyases6.457e-14InformativeDirect

Document: EC annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)cellular phenotype0.04123Least InformativeInherited
Mammalian Phenotype (MP)oxidative stress8.703e-06Highly InformativeDirect

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details) Document: WP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)genital system0Least InformativeDirect
Xenopus ANatomical entity (XAN)gonad0Least InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details) Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolases4.354e-14Least InformativeDirect
Enzyme Commission (EC)Lyases0.00661Least InformativeInherited
Enzyme Commission (EC)Oxidoreductases0.9573Least InformativeInherited
Enzyme Commission (EC)Carboxylic ester hydrolases0InformativeDirect
Enzyme Commission (EC)Acting on paired donors, with incorporation or reduction of molecular oxygen0.0006855InformativeDirect
Enzyme Commission (EC)Lyases acting on amides, amidines, etc0.3757Highly InformativeInherited

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processAntibiotic resistance0InformativeDirect
Cellular componentCytoplasmic vesicle3.353e-05Moderately InformativeDirect
Cellular componentVacuole6.431e-08InformativeDirect
DomainSignal6.988e-08Least InformativeDirect
DomainTransmembrane0.8125Least InformativeInherited
DomainEGF-like domain1.948e-05InformativeDirect
DomainSignal-anchor9.858e-05InformativeDirect
Molecular functionMetal-binding0Least InformativeDirect
Molecular functionCalcium0Moderately InformativeDirect
Post-translational modificationHydrolase6.686e-14Least InformativeDirect
Post-translational modificationLyase6.153e-10Moderately InformativeDirect
Post-translational modificationGlycoprotein0Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 5 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Calcium-dependent phosphotriesterase domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 5 hidden Markov models representing the Calcium-dependent phosphotriesterase superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]