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Arfaptin, Rac-binding fragment family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   BAR/IMD domain-like [ 116747]
Superfamily:   BAR/IMD domain-like [ 103657] (4)
Family:   Arfaptin, Rac-binding fragment [ 64599]


Family statistics
Genomes (130) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 280 639 1
Proteins 280 636 1


Gene Ontology (high-quality)

(
show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Cellular Component (CC)intracellular membrane-bounded organelle0.00062450.00006806Least InformativeDirect
Cellular Component (CC)cytoplasmic part0.0015080.00002524Least InformativeInherited

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biological regulation 0.0003143 Least Informative Direct
Biological Process (BP) response to stimulus 0.0003533 Least Informative Direct
Biological Process (BP) single-organism cellular process 0.03706 Least Informative Inherited
Biological Process (BP) organonitrogen compound metabolic process 0.1737 Least Informative Inherited
Biological Process (BP) macromolecule metabolic process 0.1961 Least Informative Inherited
Biological Process (BP) primary metabolic process 0.5184 Least Informative Inherited
Biological Process (BP) transport 0.000002762 Moderately Informative Direct
Biological Process (BP) cellular response to stimulus 0.000008247 Moderately Informative Direct
Biological Process (BP) single-organism localization 0.00009284 Moderately Informative Direct
Biological Process (BP) cell communication 0.00009876 Moderately Informative Direct
Biological Process (BP) regulation of localization 0.0009743 Moderately Informative Direct
Biological Process (BP) response to external stimulus 0.1 Moderately Informative Inherited
Biological Process (BP) macromolecule localization 0.09698 Moderately Informative Inherited
Biological Process (BP) regulation of biological quality 0.01752 Moderately Informative Inherited
Biological Process (BP) negative regulation of biological process 0.5789 Moderately Informative Inherited
Biological Process (BP) regulation of cell communication 0.008299 Moderately Informative Inherited
Biological Process (BP) regulation of signaling 0.02354 Moderately Informative Inherited
Biological Process (BP) cellular developmental process 0.04076 Moderately Informative Inherited
Biological Process (BP) response to stress 0.4801 Moderately Informative Inherited
Biological Process (BP) response to chemical 0.02843 Moderately Informative Inherited
Biological Process (BP) response to abiotic stimulus 0.02214 Moderately Informative Inherited
Biological Process (BP) system development 0.05854 Moderately Informative Inherited
Biological Process (BP) phosphate-containing compound metabolic process 0.00309 Moderately Informative Inherited
Biological Process (BP) single organism signaling 0.03335 Moderately Informative Inherited
Biological Process (BP) macromolecule modification 0.008182 Moderately Informative Inherited
Biological Process (BP) cellular protein metabolic process 0.01875 Moderately Informative Inherited
Biological Process (BP) positive regulation of cellular process 0.4489 Moderately Informative Inherited
Biological Process (BP) regulation of cellular metabolic process 0.5719 Moderately Informative Inherited
Biological Process (BP) regulation of macromolecule metabolic process 0.04574 Moderately Informative Inherited
Biological Process (BP) positive regulation of cellular component organization 0.0000002008 Informative Direct
Biological Process (BP) regulation of cellular component biogenesis 0.000006851 Informative Direct
Biological Process (BP) cellular protein localization 0.00003165 Informative Direct
Biological Process (BP) phosphorylation 0.0001736 Informative Direct
Biological Process (BP) cell development 0.0006692 Informative Direct
Biological Process (BP) positive regulation of transport 0.0007782 Informative Direct
Biological Process (BP) regulation of organelle organization 0.006133 Informative Inherited
Biological Process (BP) nervous system development 0.001221 Informative Inherited
Biological Process (BP) regulation of actin filament length 0.00000000001493 Highly Informative Direct
Biological Process (BP) regulation of protein polymerization 0.00000000002794 Highly Informative Direct
Biological Process (BP) gliogenesis 0.0000000001876 Highly Informative Direct
Biological Process (BP) negative regulation of organelle organization 0.000000001266 Highly Informative Direct
Biological Process (BP) cellular response to external stimulus 0.00000002171 Highly Informative Direct
Biological Process (BP) response to nutrient levels 0.0000001519 Highly Informative Direct
Biological Process (BP) regulation of vesicle-mediated transport 0.0000001529 Highly Informative Direct
Biological Process (BP) regulation of supramolecular fiber organization 0.000001689 Highly Informative Direct
Biological Process (BP) cell projection organization 0.000002811 Highly Informative Direct
Biological Process (BP) G-protein coupled receptor signaling pathway 0.0000754 Highly Informative Direct
Molecular Function (MF) binding 0.001071 Least Informative Inherited
Molecular Function (MF) protein binding 0.00002087 Moderately Informative Direct
Molecular Function (MF) cytoskeletal protein binding 0.000005665 Informative Direct
Molecular Function (MF) enzyme binding 0.0006542 Informative Direct
Molecular Function (MF) protein complex binding 0.00001025 Highly Informative Direct
Molecular Function (MF) actin binding 0.008268 Highly Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 0.00006806 Least Informative Direct
Cellular Component (CC) cytoplasmic part 0.00002524 Least Informative Direct
Cellular Component (CC) membrane 0.07644 Least Informative Inherited
Cellular Component (CC) cell projection 0.0003538 Moderately Informative Direct
Cellular Component (CC) endomembrane system 0.0004847 Moderately Informative Direct
Cellular Component (CC) cell periphery 0.3681 Moderately Informative Inherited
Cellular Component (CC) neuron part 0.000000001942 Informative Direct
Cellular Component (CC) Golgi apparatus 0.000000008999 Informative Direct
Cellular Component (CC) plasma membrane part 0.03058 Informative Inherited
Cellular Component (CC) synapse part 0.00000327 Highly Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Cellular componentMembrane0.001994Least InformativeInherited
Cellular componentCytoplasm0.05562Least InformativeInherited
Cellular componentCell junction0.000000000001639Moderately InformativeDirect
Cellular componentCytoskeleton0.0000000002671Moderately InformativeDirect
Cellular componentCell membrane0.00003624Moderately InformativeDirect
Cellular componentSynapse0.00000000000004029InformativeDirect
Cellular componentSynaptosome0Highly InformativeDirect
Cellular componentPostsynaptic cell membrane5.715e-16Highly InformativeDirect
Molecular functionZinc0.00005096Least InformativeDirect
Molecular functionCalcium0.000000001249Moderately InformativeDirect
Post-translational modificationActin-binding0.00000000000009552InformativeDirect
Post-translational modificationPhosphoprotein0.00000000001647Least InformativeDirect
Post-translational modificationLipoprotein0.000007188Moderately InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 8 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a BAR/IMD domain-like domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]