SUPERFAMILY 1.75 HMM library and genome assignments server

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1lk5 C:1-130,C:211-229 PDB entry domain

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   NagB/RpiA/CoA transferase-like [ 100949]
Superfamily:   NagB/RpiA/CoA transferase-like [ 100950] (8)
Family:   D-ribose-5-phosphate isomerase (RpiA), catalytic domain [ 75176]
Protein:   D-ribose-5-phosphate isomerase (RpiA), catalytic domain [75177]
PDB Entry Domain:   1lk5 C:1-130,C:211-229 [ 73964]
  SUPERFAMILY domain annotation for 1lk5c1-130,c:211-229
  PDB structure summary for 1lk5

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Internal database links

Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.

Superfamily level     Family level

Alignments of sequences to 49 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.

Superfamily level

Browse and view proteins in genomes which have different domain combinations including a NagB/RpiA/CoA transferase-like domain.

Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.

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