SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


F1F0 ATP synthase subunit C family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Membrane and cell surface proteins and peptides [ 56835] (58)
Fold:   Transmembrane helix hairpin [ 81334] (5)
Superfamily:   F1F0 ATP synthase subunit C [ 81333]
Family:   F1F0 ATP synthase subunit C [ 81332]


Family statistics
Genomes (263) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 263 1,292 4
Proteins 263 1,292 4


Worm Phenotype (WP)

(
show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism metabolism processing variant0Least InformativeDirect
Worm Phenotype (WP)cell physiology variant0.004736Least InformativeInherited
Worm Phenotype (WP)organism behavior variant0.006058Least InformativeInherited
Worm Phenotype (WP)organism environmental stimulus response variant0.006782Least InformativeInherited
Worm Phenotype (WP)cell development variant0.02667Least InformativeInherited
Worm Phenotype (WP)pattern of transgene expression variant0Moderately InformativeDirect
Worm Phenotype (WP)level of transgene expression variant0Moderately InformativeDirect
Worm Phenotype (WP)organism stress response variant0.000338Moderately InformativeDirect
Worm Phenotype (WP)germ cell differentiation variant0.0004101Moderately InformativeDirect
Worm Phenotype (WP)cell organization biogenesis variant0.0006648Moderately InformativeDirect
Worm Phenotype (WP)germ cell development variant0.002072Moderately InformativeInherited
Worm Phenotype (WP)organ system development variant0.005433Moderately InformativeInherited
Worm Phenotype (WP)cell type morphology variant0.008074Moderately InformativeInherited
Worm Phenotype (WP)cell cycle variant0.01009Moderately InformativeInherited
Worm Phenotype (WP)cell death variant0.02013Moderately InformativeInherited
Worm Phenotype (WP)cell division variant0.03918Moderately InformativeInherited
Worm Phenotype (WP)cell homeostasis metabolism variant0.0734Moderately InformativeInherited
Worm Phenotype (WP)hermaphrodite physiology variant0.00000288InformativeDirect
Worm Phenotype (WP)germ cell physiology variant0.000006843InformativeDirect
Worm Phenotype (WP)mitosis variant0.000008184InformativeDirect
Worm Phenotype (WP)endocytic transport defect0.000008737InformativeDirect
Worm Phenotype (WP)vesicle organization variant0.00001736InformativeDirect
Worm Phenotype (WP)meiotic chromosome organization variant0.00002337InformativeDirect
Worm Phenotype (WP)germ cell compartment expansion variant0.00002671InformativeDirect
Worm Phenotype (WP)cell component localization variant0.00003212InformativeDirect
Worm Phenotype (WP)avoids bacterial lawn0.00003983InformativeDirect
Worm Phenotype (WP)gonad development variant0.00005923InformativeDirect
Worm Phenotype (WP)oocyte morphology variant0.000132InformativeDirect
Worm Phenotype (WP)protein metabolism variant0.0001814InformativeDirect
Worm Phenotype (WP)diakinesis progression during oogenesis variant0.0000001756Highly InformativeDirect
Worm Phenotype (WP)germ cell compartment anucleate0.0000002635Highly InformativeDirect
Worm Phenotype (WP)oocyte septum formation variant0.0000007506Highly InformativeDirect
Worm Phenotype (WP)RAB-11 recycling endosome localization variant0.000002541Highly InformativeDirect
Worm Phenotype (WP)chromosome condensation variant0.00000268Highly InformativeDirect
Worm Phenotype (WP)lysosome-related organelle morphology variant0.000006684Highly InformativeDirect
Worm Phenotype (WP)cell membrane organization biogenesis variant0.000008344Highly InformativeDirect
Worm Phenotype (WP)nuclear appearance variant0.00003256Highly InformativeDirect

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details)
YP termFDR (all)SDYP levelAnnotation (direct or inherited)
Yeast Phenotype (YP)resistance to chemicals0Least InformativeDirect
Yeast Phenotype (YP)metabolism and growth0Least InformativeDirect
Yeast Phenotype (YP)development0Moderately InformativeDirect
Yeast Phenotype (YP)morphology0Moderately InformativeDirect
Yeast Phenotype (YP)chemical compound accumulation0Moderately InformativeDirect
Yeast Phenotype (YP)nutrient utilization0Moderately InformativeDirect
Yeast Phenotype (YP)vegetative growth0Moderately InformativeDirect
Yeast Phenotype (YP)lifespan0InformativeDirect
Yeast Phenotype (YP)oxidative stress resistance0InformativeDirect
Yeast Phenotype (YP)respiratory metabolism0InformativeDirect
Yeast Phenotype (YP)subcellular morphology0InformativeDirect
Yeast Phenotype (YP)desiccation resistance0InformativeDirect
Yeast Phenotype (YP)metal resistance0Highly InformativeDirect
Yeast Phenotype (YP)protein/peptide modification0Highly InformativeDirect
Yeast Phenotype (YP)alkaline pH resistance0Highly InformativeDirect
Yeast Phenotype (YP)respiratory growth0Highly InformativeDirect

Document: YP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)embryo0Least InformativeDirect
Xenopus ANatomical entity (XAN)urogenital system0Least InformativeDirect
Xenopus ANatomical entity (XAN)nervous system0Least InformativeDirect
Xenopus ANatomical entity (XAN)head0Least InformativeDirect
Xenopus ANatomical entity (XAN)trunk0Least InformativeDirect
Xenopus ANatomical entity (XAN)tissue0Least InformativeDirect
Xenopus ANatomical entity (XAN)anatomical cluster0Least InformativeDirect
Xenopus ANatomical entity (XAN)cavitated compound organ0Least InformativeDirect
Xenopus ANatomical entity (XAN)ectoderm0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)brain0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)alimentary system0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)testis0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)musculoskeletal system0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)viscus0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)limb0InformativeDirect
Xenopus ANatomical entity (XAN)endomesoderm0InformativeDirect
Xenopus ANatomical entity (XAN)skeletal system0InformativeDirect
Xenopus ANatomical entity (XAN)solid compound organ0InformativeDirect
Xenopus ANatomical entity (XAN)skeletal tissue0Highly InformativeDirect
Xenopus ANatomical entity (XAN)bone element0Highly InformativeDirect
Xenopus DEvelopment stage (XDE)post-embryonic stage0Least InformativeDirect
Xenopus DEvelopment stage (XDE)NF stage 660InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant structure DEvelopment stage (PDE)L mature pollen stage0InformativeDirect
Plant structure DEvelopment stage (PDE)M germinated pollen stage0InformativeDirect

Document: AP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Worm Phenotype (WP) · Yeast Phenotype (YP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 3 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a F1F0 ATP synthase subunit C domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Worm Phenotype (WP) · Yeast Phenotype (YP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Internal database links ]