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N-terminal, heterodimerisation domain of RBP7 (RpoE) superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Dodecin subunit-like [ 88797] (6)
Superfamily:   N-terminal, heterodimerisation domain of RBP7 (RpoE) [ 88798]
Families:   N-terminal, heterodimerisation domain of RBP7 (RpoE) [ 88799]


Superfamily statistics
Genomes (667) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 1,408 3,571 4
Proteins 1,405 3,570 4


Functional annotation
General category General
Detailed category Protein interaction

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) cellular aromatic compound metabolic process 0.000000000127 Least Informative Direct
Biological Process (BP) biosynthetic process 0.000003612 Least Informative Direct
Biological Process (BP) cellular nitrogen compound metabolic process 0.0000000005941 Least Informative Direct
Biological Process (BP) macromolecule metabolic process 0.0000001076 Least Informative Direct
Biological Process (BP) primary metabolic process 0.000006667 Least Informative Direct
Biological Process (BP) heterocycle metabolic process 0.0000000001076 Least Informative Direct
Biological Process (BP) organic cyclic compound metabolic process 0.0000000003683 Least Informative Direct
Biological Process (BP) gene expression 0.00000000000001079 Moderately Informative Direct
Biological Process (BP) RNA metabolic process 0 Moderately Informative Direct
Biological Process (BP) heterocycle biosynthetic process 0.00000001698 Moderately Informative Direct
Biological Process (BP) aromatic compound biosynthetic process 0.000000007947 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 0.00000001265 Moderately Informative Direct
Biological Process (BP) organic cyclic compound biosynthetic process 0.00000005766 Moderately Informative Direct
Biological Process (BP) transcription, DNA-templated 0.000000001029 Informative Direct
Molecular Function (MF) transferase activity 0.000000365 Least Informative Direct
Molecular Function (MF) transferase activity, transferring phosphorus-containing groups 0.0000000001812 Moderately Informative Direct
Molecular Function (MF) nucleotidyltransferase activity 0 Informative Direct
Molecular Function (MF) RNA polymerase activity 0 Highly Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 0.00000007853 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.000002556 Least Informative Direct
Cellular Component (CC) nuclear part 0.0000000581 Moderately Informative Direct
Cellular Component (CC) intracellular organelle lumen 0.000000001609 Moderately Informative Direct
Cellular Component (CC) transferase complex 0 Moderately Informative Direct
Cellular Component (CC) nucleoplasm part 0.000000001772 Informative Direct
Cellular Component (CC) transferase complex, transferring phosphorus-containing groups 0 Informative Direct
Cellular Component (CC) DNA-directed RNA polymerase II, core complex 0.000005301 Highly Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Cellular componentNucleus0.000000000001075Least InformativeDirect
Cellular componentDNA-directed RNA polymerase0Highly InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 3 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a N-terminal, heterodimerisation domain of RBP7 (RpoE) domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 3 hidden Markov models representing the N-terminal, heterodimerisation domain of RBP7 (RpoE) superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]