SUPERFAMILY 1.75 HMM library and genome assignments server

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Troponin I family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Coiled coil proteins [ 57942] (7)
Fold:   Parallel coiled-coil [ 57943] (34)
Superfamily:   Troponin coil-coiled subunits [ 90250] (2)
Family:   Troponin I [ 90254]


Family statistics
Genomes (63) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 329 863 4
Proteins 329 862 4


Worm Phenotype (WP)

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show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)cell development variant0Least InformativeDirect
Worm Phenotype (WP)organism behavior variant0Least InformativeDirect
Worm Phenotype (WP)slow growth0Least InformativeDirect
Worm Phenotype (WP)organism segment morphology variant0.0008675Moderately InformativeDirect
Worm Phenotype (WP)body region morphology variant0.0008786Moderately InformativeDirect
Worm Phenotype (WP)cell type morphology variant0.002022Moderately InformativeInherited
Worm Phenotype (WP)defecation variant0.0002322InformativeDirect
Worm Phenotype (WP)egg laying variant0.01849InformativeInherited
Worm Phenotype (WP)pericellular component physiology variant0.00000005142Highly InformativeDirect
Worm Phenotype (WP)alimentary system morphology variant0.000001209Highly InformativeDirect
Worm Phenotype (WP)egg laying defective0.00001186Highly InformativeDirect
Worm Phenotype (WP)neurite development variant0.07742Highly InformativeInherited

Document: WP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)tissue0Least InformativeDirect
Xenopus ANatomical entity (XAN)anatomical cluster0Least InformativeDirect
Xenopus ANatomical entity (XAN)musculoskeletal system0Moderately InformativeDirect
Xenopus DEvelopment stage (XDE)post-embryonic stage0Least InformativeDirect

Document: XA annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Worm Phenotype (WP) · Xenopus Anatomy (XA) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 4 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Troponin coil-coiled subunits domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Worm Phenotype (WP) · Xenopus Anatomy (XA) · Internal database links ]