Example sequences
To try out the server you may click the check-box provided on the sequence
search page and the example sequence 1plc (plastocyanin) is automatically used:
>1plc
IDVLLGADDGSLAFVPSEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFE
VALSNKGEYSFYCSPHQGAGMVGKVTVN
Here are a few more
which you may cut and paste into the text box provided. All of these are members of the PDB and therefore will be
caught by the blast pre-filter. To run against the model library you must use a sequence which is not
an obvious homologue to a sequence of known structure.
>d1babb_ Hemoglobin, beta-chain {Human (Homo sapiens)}
vhltpeeksavtalwgkvnvdevggealgrllvvypwtqrffesfgdlstpdavmgnpkv
kahgkkvlgafsdglahldnlkgtfatlselhcdklhvdpenfrllgnvlvcvlahhfgk
eftppvqaayqkvvagvanalahkyh
>d1bf5a1 1.49.1.1.1 (136-316) STAT-1, coiled coil domain
{Human (Homo sapiens)}
LDKQKELDSKVRNVKDKVMCIE
HEIKSLEDLQDEYDFKCKTLQNREHLLLKKMYLMLDNK RKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSACIGGPPNACLDQLQNWFTIVAES
LQQVRQQLKKLEELEQKYTYEHDPITKNKQVLWDRTFSLFQQLIQSS
>AB019440.00001
CTACAGACACTTTTCCCCCGAGTTTCGGCCGAGTCAAACCCTCCCGGACTGGCTAAACAC
CATCCGCCAGTAGTCATAGAACTCTTGGCCACTGCCATACCGGTCCAGGCAAAGCAATAC
CCCACAAGTCAGCAGGCTAGAGAGGGGATTAATCCCCACATTCAACGACTGTTACAAGCT
GGCATACTTACCCCATGCCAGTCGGCCTGGAACACGCCATTTTTGCCGGTCCAGAAACCT
GGAACAAATGATTACTGGCCAGTACAAGACTTAAGGGACGTTAATAAATGGACTGTTGCT
GTCCACCCAACCATTCCTAATCCCTATACTCTACTCAGCCTGCTCCCACCAGAACATACA
GTATACACTGTCCTTGACCTGAAAGATGCTTTCTTTGCTATCCCTCTGGCCCCCAAAATC
CAGCCGATTTTTGCTTTCAAATGGACAGATCCAAGATCAGGAGACACTACCCAACTGACT
TGGACTCAGTTACCTCAGGGTTTTAAAAATTCCCCTACCCTTTTTGGAGAGGCTCTTCAG
CAAGATCTTATACCT
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