Family Assignments

Domains Proteins SCOP Link Families
12 12 SCOP 52670 RecA protein-like (ATPase-domain)
10 10 SCOP 52375 Class I aminoacyl-tRNA synthetases (RS), catalytic domain
8 8 SCOP 88788 N6 adenine-specific DNA methylase, DAM
7 7 SCOP 52686 ABC transporter ATPase domain-like
7 7 SCOP 55682 Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
6 6 SCOP 52592 G proteins
6 6 SCOP 81269 Extended AAA-ATPase domain
5 3 SCOP 53068 Actin/HSP70
3 3 SCOP 48404 Ankyrin repeat
3 3 SCOP 50448 Elongation factors
3 2 SCOP 54229 Ribonuclease PH domain 1-like
3 3 SCOP 56220 DNase I-like
3 2 SCOP 81268 Tandem AAA-ATPase domain
2 2 SCOP 47918 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 SCOP 50282 Cold shock DNA-binding domain-like
2 2 SCOP 50466 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
2 2 SCOP 50678 ValRS/IleRS/LeuRS editing domain
2 2 SCOP 51751 Tyrosine-dependent oxidoreductases
2 2 SCOP 51883 Aminoacid dehydrogenase-like, C-terminal domain
2 2 SCOP 51943 FAD/NAD-linked reductases, N-terminal and central domains
2 2 SCOP 52211 Succinyl-CoA synthetase domains
2 2 SCOP 52541 Nucleotide and nucleoside kinases
2 2 SCOP 52652 Nitrogenase iron protein-like
2 2 SCOP 52901 Glutathione peroxidase-like
2 2 SCOP 53099 Ribonuclease H
2 2 SCOP 53138 Ribosomal protein L18 and S11
2 2 SCOP 53417 GABA-aminotransferase-like
2 1 SCOP 53902 Thiolase-related
2 2 SCOP 54212 Translational machinery components
2 1 SCOP 54981 EF-G/eEF-2 domains III and V
2 2 SCOP 55879 DNA gyrase/MutL, N-terminal domain
2 2 SCOP 100921 Heat shock protein 70kD (HSP70), peptide-binding domain
2 2 SCOP 102945 RelA/SpoT domain
1 1 SCOP 46549 Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
1 1 SCOP 46610 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 SCOP 46676 Cytochrome bc1 domain
1 1 SCOP 47064 Ribosomal protein S15
1 1 SCOP 47253 Ribonucleotide reductase-like
1 1 SCOP 47324 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
1 1 SCOP 47974 Ribosomal protein S7
1 1 SCOP 48151 Endonuclease III
1 1 SCOP 48335 DNA repair protein MutS, domain III
1 1 SCOP 48558 L-aspartase/fumarase
1 1 SCOP 49541 Periplasmic domain of cytochrome c oxidase subunit II
1 1 SCOP 50023 Rieske iron-sulfur protein (ISP)
1 1 SCOP 50114 C-terminal domain of ribosomal protein L2
1 1 SCOP 50194 Ribosomal protein L14
1 1 SCOP 50263 Single strand DNA-binding domain, SSB
1 1 SCOP 50325 Inorganic pyrophosphatase
1 1 SCOP 50461 Ribosomal protein L3
1 1 SCOP 50495 Prokaryotic proteases
1 1 SCOP 51165 Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
1 1 SCOP 51284 dUTPase-like
1 1 SCOP 51352 Triosephosphate isomerase (TIM)
1 1 SCOP 51396 FMN-linked oxidoreductases
1 1 SCOP 51570 Class I aldolase
1 1 SCOP 51594 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
1 1 SCOP 51629 Pyruvate phosphate dikinase, C-terminal domain
1 1 SCOP 51727 Uroporphyrinogen decarboxylase, UROD
1 1 SCOP 51800 Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
1 1 SCOP 51848 LDH N-terminal domain-like
1 1 SCOP 51900 CoA-binding domain
1 1 SCOP 51934 Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
1 1 SCOP 52002 R1 subunit of ribonucleotide reductase, C-terminal domain
1 1 SCOP 52030 GroEL-like chaperone, apical domain
1 1 SCOP 52097 Clp protease, ClpP subunit
1 1 SCOP 52147 Mug-like
1 1 SCOP 52152 FabD-like
1 1 SCOP 52162 Ribosomal protein L13
1 1 SCOP 52167 Ribosomal protein L4
1 1 SCOP 52173 CheY-related
1 1 SCOP 52314 Ribosomal protein S2
1 1 SCOP 52491 Tubulin, GTPase domain
1 1 SCOP 52508 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
1 1 SCOP 52778 CAT-like
1 1 SCOP 53118 DnaQ-like 3'-5' exonuclease
1 1 SCOP 53179 Peptidyl-tRNA hydrolase-like
1 1 SCOP 53201 Leucine aminopeptidase, C-terminal domain
1 1 SCOP 53204 Bacterial dinuclear zinc exopeptidases
1 1 SCOP 53240 Malic enzyme N-domain
1 1 SCOP 53329 Formyltransferase
1 1 SCOP 53384 AAT-like
1 1 SCOP 53496 Prolyl oligopeptidase, C-terminal domain
1 1 SCOP 53624 MurCDEF
1 1 SCOP 53629 Folylpolyglutamate synthetase
1 1 SCOP 53660 Dimeric isocitrate & isopropylmalate dehydrogenases
1 1 SCOP 53687 Tryptophan synthase beta subunit-like PLP-dependent enzymes
1 1 SCOP 53749 Phosphoglycerate kinase
1 1 SCOP 53760 Peptidoglycan biosynthesis glycosyltransferase MurG
1 1 SCOP 53801 Ferrochelatase
1 1 SCOP 53851 Phosphate binding protein-like
1 1 SCOP 54224 DNA gyrase/MutL, second domain
1 1 SCOP 54571 Ribosomal protein S19
1 1 SCOP 54714 Elongation factor Ts (EF-Ts), dimerisation domain
1 1 SCOP 54720 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 SCOP 54748 Ribosomal L11/L12e N-terminal domain
1 1 SCOP 54822 Ribosomal protein S3 C-terminal domain
1 1 SCOP 54920 Nucleoside diphosphate kinase, NDK
1 1 SCOP 55000 Ribosomal protein S10
1 1 SCOP 55121 Pseudouridine synthase I TruA
1 1 SCOP 55178 Ribosomal protein S4
1 1 SCOP 55187 Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
1 1 SCOP 55195 Ribosome recycling factor, RRF
1 1 SCOP 55209 Enolpyruvate transferase, EPT
1 1 SCOP 55272 DNA repair protein MutS, domain I
1 1 SCOP 55283 Ribosomal protein L5
1 1 SCOP 55348 GAPDH-like
1 1 SCOP 55425 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
1 1 SCOP 55505 Neurolysin-like
1 1 SCOP 55812 MutT-like
1 1 SCOP 55847 N-acetylmuramoyl-L-alanine amidase-like
1 1 SCOP 55875 Heat shock protein 90, HSP90, N-terminal domain
1 1 SCOP 55921 Creatinase/aminopeptidase
1 1 SCOP 56048 Ribosomal protein S8
1 1 SCOP 56081 Succinyl-CoA synthetase, beta-chain, N-terminal domain
1 1 SCOP 56085 Pyruvate phosphate dikinase, N-terminal domain
1 1 SCOP 56096 Adenylation domain of NAD+-dependent DNA ligase
1 1 SCOP 56328 Lactate & malate dehydrogenases, C-terminal domain
1 1 SCOP 56350 Lambda integrase-like, catalytic core
1 1 SCOP 56421 Peptide deformylase
1 1 SCOP 56426 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
1 1 SCOP 56673 DNA polymerase I
1 1 SCOP 56713 Prokaryotic type I DNA topoisomerase
1 1 SCOP 56720 Type II DNA topoisomerase
1 1 SCOP 56732 DNA primase DnaG catalytic core
1 1 SCOP 56753 D-aminoacid aminotransferase-like PLP-dependent enzymes
1 1 SCOP 56802 Acetyl-CoA synthetase-like
1 1 SCOP 56809 Ribosomal protein L1
1 1 SCOP 64006 Undecaprenyl diphosphate synthase
1 1 SCOP 64264 Prokaryotic ribosomal protein L17
1 1 SCOP 64485 RNA-polymerase beta
1 1 SCOP 64490 RNA-polymerase beta-prime
1 1 SCOP 69797 Thymidylate synthase-complementing protein Thy1
1 1 SCOP 74732 Ribosomal protein L20
1 1 SCOP 74983 Small protein B (SmpB)
1 1 SCOP 75305 Amidase signature (AS) enzymes
1 1 SCOP 75323 Exonuclease RecJ
1 1 SCOP 75621 Release factor
1 1 SCOP 75626 YebC-like
1 1 SCOP 81441 Cytochrome c oxidase subunit I-like
1 1 SCOP 81451 Cytochrome c oxidase subunit III-like
1 1 SCOP 81642 Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 SCOP 81647 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 SCOP 81695 Chromosomal replication initiation factor DnaA C-terminal domain IV
1 1 SCOP 81768 Pre-protein crosslinking domain of SecA
1 1 SCOP 81887 Helical scaffold and wing domains of SecA
1 1 SCOP 82052 Obg GTP-binding protein N-terminal domain
1 1 SCOP 82267 TatD Mg-dependent DNase-like
1 1 SCOP 82583 G domain-linked domain
1 1 SCOP 88947 Sigma2 domain of RNA polymerase sigma factors
1 1 SCOP 89624 Ribose/Galactose isomerase RpiB/AlsB
1 1 SCOP 89629 tRNA(m1G37)-methyltransferase TrmD
1 1 SCOP 101340 HD domain
1 1 SCOP 101354 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 SCOP 101905 GyrA/ParC C-terminal domain-like
1 1 SCOP 102755 Hsp90 middle domain
1 1 SCOP 102769 ATP-dependent protease Lon (La), catalytic domain
1 1 SCOP 102887 Coproporphyrinogen III oxidase
1 1 SCOP 102928 NifU/IscU domain
1 1 SCOP 103089 OmpA-like
1 1 SCOP 110112 Ctag/Cox11
1 1 SCOP 111305 Recombination protein RecR
1 1 SCOP 117888 Ribosomal protein L16p
1 1 SCOP 117984 GGDEF domain
1 1 SCOP 118216 Proton glutamate symport protein
1 1 SCOP 140991 FtsH protease domain-like
1 1 SCOP 141092 Ribosomal protein L21p
1 1 SCOP 141245 Ribosomal protein L19
1 1 SCOP 141368 UbiD middle domain-like
1 1 SCOP 142020 Nqo1 FMN-binding domain-like
1 1 SCOP 142644 RPA4359-like
1 1 SCOP 142721 PyrH-like
1 1 SCOP 143642 LplA-like
1 1 SCOP 143812 GatB/GatE catalytic domain-like
1 1 SCOP 143969 UbiD C-terminal domain-like
1 1 SCOP 144028 Nqo4-like
1 1 SCOP 144031 Nq06-like
1 1 SCOP 159742 Atu1826-like
1 1 SCOP 161112 Cation efflux protein transmembrane domain-like

The following families have one or more weak hits: