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Domain combinations for _gap_,46785,48008 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

46785 - "Winged helix" DNA-binding domain
48008 - GntR ligand-binding domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Solanum_lycopersicum_v.2.3   (Tomato)   0
Phytophthora_capsici_ 0
Blastococcus_saxobsidens_DD2 1
Geodermatophilus_obscurus_DSM_43160 1
Frankia_symbiont_of_Datisca_glomerata 0
Frankia_sp._EAN1pec 3
Frankia_alni_ACN14a 2
Thermomonospora_curvata_DSM_43183 1
Kitasatospora_setae_KM-6054 1
Streptomyces_coelicolor_A3(2) 2
Streptomyces_sp._PAMC26508 1
Streptomyces_flavogriseus_ATCC_33331 1
Streptomyces_sp._SirexAA-E 2
Streptomyces_griseus_subsp._griseus_NBRC_13350 2
Streptomyces_bingchenggensis_BCW-1 1
Streptomyces_violaceusniger_Tu_4113 1
Streptomyces_avermitilis_MA-4680 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Streptomyces_scabiei_87.22 2
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 2
Pseudonocardia_dioxanivorans_CB1190 1
Microlunatus_phosphovorus_NM-1 0
Gordonia_polyisoprenivorans_VH2 0
Rhodococcus_jostii_RHA1 2
Rhodococcus_opacus_B4 0
Mycobacterium_vanbaalenii_PYR-1 1
Mycobacterium_canettii_CIPT_140010059 1
Mycobacterium_tuberculosis_KZN_1435 1
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 1
Corynebacterium_variabile_DSM_44702 1
Arthrobacter_aurescens_TC1 1
Arthrobacter_sp._Rue61a 1
Actinomyces_sp._F0330 1
Desulfosporosinus_acidiphilus_SJ4 1
Desulfovibrio_piezophilus 1
Burkholderia_phytofirmans_PsJN 1
Burkholderia_phymatum_STM815 1
Cupriavidus_metallidurans_CH34 2
Cupriavidus_necator_N-1 2
Ralstonia_pickettii_12D 1
Burkholderia_sp._RPE64 1
Burkholderia_thailandensis_E264 2
Delftia_acidovorans_SPH-1 1
Acidovorax_citrulli_AAC00-1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1
Collimonas_fungivorans_Ter331 3
Bordetella_pertussis_Tohama_I 1
Sphingomonas_wittichii_RW1 1
Pseudovibrio_sp._FO-BEG1 1
Tistrella_mobilis_KA081020-065 1
Azospirillum_sp._B510 2
Polymorphum_gilvum_SL003B-26A1 1
Xanthobacter_autotrophicus_Py2 1
Azorhizobium_caulinodans_ORS_571 3
Sinorhizobium_fredii_NGR234 1
Rhizobium_etli_CIAT_652 1
Agrobacterium_sp._H13-3 2
Mesorhizobium_loti_MAFF303099 1
Pelagibacterium_halotolerans_B2 1
Bradyrhizobium_japonicum_USDA_110 3
Pseudoalteromonas_haloplanktis_TAC125 1
Xanthomonas_campestris_pv._campestris_str._B100 1
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 1
Cronobacter_turicensis_z3032 1
Escherichia_fergusonii_ATCC_35469 1
Pseudomonas_putida_F1 1

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Strains
Genome     Number
Frankia_sp._EuI1c 1
Frankia_sp._CcI3 2
Streptomyces_albus_J1074 1
Streptomyces_rapamycinicus_NRRL_5491 1
Streptomyces_davawensis_JCM_4913 2
Streptomyces_fulvissimus_DSM_40593 2
Streptomyces_venezuelae_ATCC_10712 2
Streptomyces_collinus_Tu_365 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 2
Saccharothrix_espanaensis_DSM_44229 2
Propionibacterium_acidipropionici_ATCC_4875 1
Mycobacterium_avium_subsp._paratuberculosis_K-10 1
Mycobacterium_canettii_CIPT_140070017 1
Mycobacterium_canettii_CIPT_140060008 1
Mycobacterium_canettii_CIPT_140070008 1
Mycobacterium_canettii_CIPT_140070010 1
Mycobacterium_tuberculosis_CAS/NITR204 1
Mycobacterium_tuberculosis_UT205 1
Mycobacterium_tuberculosis_CTRI-2 1
Mycobacterium_tuberculosis_KZN_605 1
Mycobacterium_tuberculosis_KZN_4207 1
Mycobacterium_tuberculosis_CCDC5079 1
Mycobacterium_tuberculosis_CCDC5079 1
Mycobacterium_tuberculosis_H37Ra 1
Mycobacterium_tuberculosis_str._Haarlem 1
Mycobacterium_tuberculosis_F11 1
Mycobacterium_bovis_AF2122/97 1
Mycobacterium_bovis_BCG_str._Mexico 1
Mycobacterium_bovis_BCG_str._Tokyo_172 1
Staphylococcus_aureus_subsp._aureus_CN1 1
Staphylococcus_aureus_subsp._aureus_71193 1
Burkholderia_phenoliruptrix_BR3459a 1
Ralstonia_solanacearum_FQY_4 1
Burkholderia_sp._YI23 1
Burkholderia_sp._CCGE1003 1
Burkholderia_sp._CCGE1001 1
Burkholderia_pseudomallei_1710b 3
Burkholderia_cenocepacia_AU_1054 1
Burkholderia_cepacia_GG4 1
Bordetella_pertussis_CS 1
Bordetella_parapertussis_18323 1
Phaeobacter_gallaeciensis_DSM_26640 1
Rhodobacter_sphaeroides_KD131 1
Rhodospirillum_rubrum_ATCC_11170 1
Rhizobium_etli_CFN_42 1
Mesorhizobium_australicum_WSM2073 1
Hyphomicrobium_denitrificans_1NES1 1
Rhodopseudomonas_palustris_CGA009 1
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 1
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 1
Salmonella_enterica_serovar_Bovismorbificans_genomics 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 1
Pseudomonas_syringae_pv._phaseolicola_1448A 1
Pseudomonas_putida_DOT-T1E 1
Pseudomonas_putida_ND6 1

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Others
Genome     Number
Ricinus_communis__(Early_assembly)   (Castor bean)   1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   0
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   0
NCBI_plasmid_sequences_(Plasmids) 11
STRING_v9.0.5_(STRING) 69
Uniprot_2018_03_genome 8766
NCBI_2017_08_genome 11600
TargetDB__(Targets) 3

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