SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,50494,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50494 - Trypsin-like serine proteases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   16
Pan_troglodytes_76_2.1.4   (Chimpanzee)   5
Gorilla_gorilla_76_3.1   (Western gorilla)   7
Pongo_abelii_76_2   (Sumatran orangutan)   3
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   6
Papio_anubis_76   (Olive baboon)   9
Macaca_mulatta_76_1   (Rhesus monkey)   6
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   6
Otolemur_garnettii_76_3   (Small-eared galago)   6
Microcebus_murinus_76_1   (Gray mouse lemur)   2
Rattus_norvegicus_76_5.0   (Norway rat)   11
Mus_musculus_76_38   (House mouse)   11
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   2
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   6
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   2
Cavia_porcellus_76_3   (Domestic guinea pig)   4
Oryctolagus_cuniculus_76_2   (Rabbit)   5
Ochotona_princeps_76   (American pika)   3
Tupaia_belangeri_76   (Northern tree shrew)   2
Sus_scrofa_76_10.2   (Pig)   7
Bos_taurus_76_3.1   (Cattle)   7
Ovis_aries_76_3.1   (Sheep)   7
Vicugna_pacos_76_1   (Alpaca)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   2
Mustela_putorius_furo_76_1.0   (Domestic ferret)   8
Ailuropoda_melanoleuca_76_1   (Giant panda)   8
Canis_familiaris_76_3.1   (Dog)   10
Felis_catus_76_6.2   (Domestic cat)   5
Equus_caballus_76_2   (Horse)   4
Myotis_lucifugus_76_2.0   (Little brown bat)   8
Pteropus_vampyrus_76_1   (Large flying fox)   2
Sorex_araneus_76_1   (European shrew)   1
Erinaceus_europaeus_76   (Western European hedgehog)   2
Procavia_capensis_76_1   (Cape rock hyrax)   2
Loxodonta_africana_76_3   (African savanna elephant)   4
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   5
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   4
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   3
Ornithorhynchus_anatinus_76_5   (Platypus)   2
Saccoglossus_kowalevskii_v3.0 6
Petromyzon_marinus_76_7.0   (Sea lamprey)   0
Meleagris_gallopavo_76_2   (Turkey)   0
Gallus_gallus_76_4   (Chicken)   1
Anas_platyrhynchos_76_1.0   (Mallard)   0
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   3
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_76_2.0   (Green anole)   0
Xenopus_laevis_   (African clawed frog)   4
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_76_1   (Coelacanth)   0
Lepisosteus_oculatus_76   (Spotted gar)   2
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1
Takifugu_rubripes_76_4   (Torafugu)   2
Oryzias_latipes_76_1   (Japanese medaka)   2
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   3
Poecilia_formosa_76   (Amazon molly)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   4
Astyanax_mexicanus_76   (Mexican tetra)   4
Danio_rerio_76_9   (Zebrafish)   3
Oikopleura_dioica 16
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   0
Ciona_intestinalis_76   (Vase tunicate)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Adineta_vaga 8
Crassostrea_gigas_22   (Pacific oyster)   8
Lottia_gigantea_   (Owl limpet)   5
Helobdella_robusta_ 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   8
Heliconius_melpomene_   (Postman butterfly)   7
Bombyx_mori_   (Domestic silkworm)   4
Nasonia_vitripennis_   (Jewel wasp)   6
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Atta_cephalotes_v1.1 4
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3
Lucilia_cuprina   (Australian sheep blowfly)   2
Drosophila_grimshawi_1.3 9
Drosophila_willistoni_1.3 5
Drosophila_pseudoobscura_2.13 9
Drosophila_persimilis_1.3 5
Drosophila_suzukii 7
Drosophila_yakuba_1.3 10
Drosophila_simulans_1.3 10
Drosophila_sechellia_1.3 12
Drosophila_melanogaster_76_5   (Fruit fly)   18
Drosophila_erecta_1.3 9
Drosophila_ananassae_1.3 9
Drosophila_virilis_1.2 8
Drosophila_mojavensis_1.3 8
Megaselia_scalaris_22 0
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   11
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   8
Anopheles_darlingi_22   (American malaria mosquito)   13
Anopheles_gambiae_49_3j   (African malaria mosquito)   7
Tribolium_castaneum_3.0   (Red flour beetle)   2
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3
Acyrthosiphon_pisum_   (Pea aphid)   1
Rhodnius_prolixus_22 2
Daphnia_pulex_   (Common water flea)   11
Strigamia_maritima_22 1
Sarcoptes_scabiei 5
Tetranychus_urticae_   (Two-spotted spider mite)   6
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   2
Pristionchus_pacificus_ 2
Meloidogyne_incognita_   (Southern root-knot nematode)   6
Onchocerca_volvulus_22 1
Caenorhabditis_japonica_ 4
Caenorhabditis_brenneri_ 6
Caenorhabditis_remanei_ 14
Caenorhabditis_elegans_76_235   (Roundworm)   8
Caenorhabditis_briggsae_2 7
Trichinella_spiralis_22 5
Hymenolepis_microstoma_ 1
Echinococcus_multilocularis_ 2
Echinococcus_granulosus_ 2
Taenia_solium_   (Pork tapeworm)   1
Schistosoma_mansoni_ 1
Acropora_digitifera_v1.0 6
Hydra_vulgaris 2
Amphimedon_queenslandica 1
Monosiga_brevicollis_ 1
Sphaeroforma_arctica_JP610_ 2
Capsaspora_owczarzaki_ATCC_30864_ 1
Conidiobolus_coronatus_NRRL28638_v1.0 0
Sporisorium_reilianum_22 1
Ustilago_maydis_ 1
Mixia_osmundae_IAM_14324_v1.0 0
Rhodotorula_graminis_WP1_v1.0 1
Sporobolomyces_roseus_IAM_13481_ 1
Piloderma_croceum_F_1598_v1.0 1
Coniophora_puteana 4
Pisolithus_tinctorius_Marx_270_v1.0 5
Scleroderma_citrinum_Foug_A_v1.0 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1
Galerina_marginata_v1.0 1
Hebeloma_cylindrosporum_h7_v2.0 2
Laccaria_bicolor_S238N-H82_ 4
Agaricus_bisporus_var._bisporus_ 1
Schizophyllum_commune_ 1
Stereum_hirsutum_FP-91666_SS1__v1.0 1
Heterobasidion_annosum_ 2
Punctularia_strigosozonata_v1.0 1
Sebacina_vermifera_MAFF_305830_v1.0 1
Tulasnella_calospora_AL13/4D_v1.0 1
Postia_placenta_ 0
Fomitopsis_pinicolav1.0 2
Fomitopsis_pinicola_FP-58527_SS1_v3.0 2
Daldinia_eschscholzii_EC12_v1.0 1
Apiospora_montagnei_NRRL_25634_v1.0 2
Magnaporthe_poae_ATCC_64411_22 1
Magnaporthe_grisea_70-15_ 0
Podospora_anserina_ 1
Thielavia_terrestris_NRRL_8126_ 0
Neurospora_tetrasperma_ 1
Neurospora_discreta_FGSC_8579_ 1
Neurospora_crassa_OR74A_ 1
Verticillium_albo-atrum_VaMs.102_ 1
Verticillium_dahliae_VdLs.17_ 1
Glomerella_graminicola_22 1
Fusarium_graminearum_ 3
Nectria_haematococca_mpVI_ 4
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1
Fusarium_verticillioides_7600_ 1
Trichoderma_asperellum_CBS_433.97_v1.0 1
Trichoderma_atroviride_ 1
Trichoderma_reesei_1.2 2
Trichoderma_virens_Gv29-8_ 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1
Trichoderma_harzianum_CBS_226.95_v1.0 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   1
Alternaria_brassicicola_ 0
Pyrenophora_teres_f._teres_22 1
Stagonospora_nodorum_ 1
Mycosphaerella_graminicola_IPO323_ 0
Septoria_musiva_v1.0 0
Coccidioides_posadasii_RMSCC_3488_ 0
Coccidioides_immitis_RS_ 0
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1
Trichophyton_equinum_CBS_127.97_ 0
Trichophyton_tonsurans_CBS_112818_ 1
Trichophyton_rubrum_CBS_118892_ 0
Uncinocarpus_reesii_1704_ 0
Aspergillus_zonatus_v1.0 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 0
Penicillium_chrysogenum_v1.0 0
Aspergillus_acidus_v1.0 1
Aspergillus_fumigatus_Af293 0
Aspergillus_nidulans_FGSC_A4_ 1
Aspergillus_glaucus 1
Neosartorya_fischeri_NRRL_181_ 0
Aspergillus_terreus_NIH2624_ 0
Aspergillus_oryzae_RIB40_ 1
Aspergillus_flavus_NRRL3357_ 3
Tuber_melanosporum_Mel28_22 2
Tuber_melanosporum_Vittad_   (Perigord truffle)   2
Pichia_membranifaciensv1.0 0
Candida_tanzawaensis_NRRL_Y-17324__v1.0 1
Candida_dubliniensis_CD36_ 1
Candida_parapsilosis_ 1
Candida_albicans_SC5314 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 1
Pichia_stipitis_CBS_6054_ 2
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 2
Debaromyces_hansenii 2
Yarrowia_lipolytica_CLIB122 0
Candida_lusitaniae_ATCC_42720_ 1
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 0
Schizosaccharomyces_cryophilus_OY26_22 0
Schizosaccharomyces_octosporus_yFS286_ 0
Schizosaccharomyces_japonicus_yFS275_ 0
Allomyces_macrogynus_ATCC_38327_ 0
Spizellomyces_punctatus_DAOM_BR117_ 0
Dictyostelium_discoideum 1
Selaginella_moellendorffii_ 2
Picea_abies   (Norway spruce)   1
Eucalyptus_grandis_v201   (Rose gum)   2
Theobroma_cacao_B97-61/B2_v1   (Cacao)   2
Gossypium_raimondii_v221 5
Citrus_clementina_v165 4
Citrus_sinensis_v154   (Sweet orange)   5
Thellungiella_halophila_v173 5
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2
Capsella_rubella_v183 3
Arabidopsis_lyrata_   (Lyrate rockcress)   5
Arabidopsis_thaliana_10   (Thale cress)   4
Carica_papaya_   (Papaya)   5
Medicago_truncatula_   (Barrel medic)   5
Phaseolus_vulgaris_v186   (French bean)   2
Glycine_max_v109   (Soybean)   4
Cucumis_sativus_v122   (Cucumber)   4
Fragaria_vesca_   (Wild strawberry)   1
Malus_domestica_v196   (Apple)   5
Prunus_persica_v139   (Peach)   2
Linum_usitatissimum_v200   (Flax)   7
Manihot_esculenta_v147   (Cassava)   2
Populus_trichocarpa_v156   (Black cottonwood)   4
Vitis_vinifera_   (Wine grape)   2
Mimulus_guttatus_v140   (Spotted monkey flower)   4
Solanum_lycopersicum_v.2.3   (Tomato)   2
Solanum_tuberosum_   (Potato)   5
Actinidia_chinensis_Hongyang_ 6
Aquilegia_coerulea_v195 4
Triticum_urartu_22 3
Triticum_aestivum_22   (Bread wheat)   10
Aegilops_tauschii_22 7
Brachypodium_distachyon_   (Stiff brome)   6
Oryza_barthii_22   (African wild rice)   14
Oryza_meridionalis_22 25
Oryza_glumaepatula_22 11
Oryza_glaberrima   (African rice)   8
Oryza_punctata_22 16
Oryza_nivara_22 18
Oryza_brachyantha_22   (Malo sina)   4
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   23
Oryza_sativa_v193   (Rice)   23
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   5
Panicum_virgatum_v202   (Switchgrass)   11
Setaria_italica_v164   (Foxtail millet)   8
Zea_mays_subsp._mays_   (Maize)   7
Zea_mays_v181   (Maize)   7
Sorghum_bicolor_   (Sorghum)   3
Musa_balbisiana   (Balbis banana)   4
Musa_acuminata_22   (Wild Malaysian banana)   3
Amborella_trichopoda_22 2
Physcomitrella_patens 4
Coccomyxa_subellipsoidea_sp._C-169_v2 5
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 7
Chlorella_vulgaris_ 5
Volvox_carteri_f._nagariensis_ 2
Volvox_carteri_v199 3
Chlamydomonas_reinhardtii_4.0 7
Bathycoccus_prasinos_ 1
Micromonas_sp._RCC299_ 2
Micromonas_pusilla_CCMP1545_v3.0 1
Porphyridium_purpureum_02_2012 0
Thecamonas_trahens_ATCC_50062_ 2
Bigelowiella_natans_CCMP2755_22 3
Leishmania_mexicana_2.4 1
Leishmania_major_strain_Friedlin_ 1
Leishmania_infantum_JPCM5_2.4 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1
Trypanosoma_vivax_ 1
Trypanosoma_congolense_2.4 1
Trypanosoma_brucei_gambiense_v4.1 1
Trypanosoma_brucei_TREU927_v4.1 1
Aureococcus_anophagefferens_ 1
Albugo_laibachii_22 2
Pythium_iwayamai_DAOM_BR242034_22 3
Pythium_arrhenomanes_ATCC_12531_22 3
Pythium_ultimum_v1.7-2 8
Pythium_aphanidermatum_DAOM_BR444_22 6
Pythium_irregulare_DAOM_BR486_22 7
Pythium_vexans_DAOM_BR484_22 4
Phytophthora_ramorum_1.1   (Sudden oak death agent)   3
Phytophthora_sojae_1.1 7
Phytophthora_infestans_T30-4_ 3
Phytophthora_capsici_ 4
Hyaloperonospora_arabidopsidis_22 2
Phaeodactylum_tricornutumCCAP_1055/1 3
Fragilariopsis_cylindrus 9
Thalassiosira_pseudonana_CCMP1335 11
Perkinsus_marinus_ATCC_50983_ 0
Tetrahymena_thermophila_SB210_1_ 1
Neospora_caninum 2
Toxoplasma_gondii_VEG 3
Toxoplasma_gondii_ME49 3
Toxoplasma_gondii_GT1 3
Plasmodium_falciparum_3D7_ 1
Plasmodium_vivax_SaI-1_7.0 1
Symbiodinium_minutum_clade_B1_v1.2 2
Naegleria_gruberi_ 14
Guillardia_theta_CCMP2712_v1.0_ 2
Emiliania_huxleyi_CCMP1516_ 19
Microcoleus_sp._PCC_7113 1
Trichodesmium_erythraeum_IMS101 1
Gloeocapsa_sp._PCC_7428 1
Gloeobacter_violaceus_PCC_7421 1
Candidatus_Phytoplasma_mali 1
Aster_yellows_witches'-broom_phytoplasma_AYWB 1
Onion_yellows_phytoplasma_OY-M 1
Ureaplasma_parvum_serovar_3_str._ATCC_27815 2
Ureaplasma_urealyticum_serovar_10_str._ATCC_33699 3
Mycoplasma_haemocanis_str._Illinois 2
Mycoplasma_wenyonii_str._Massachusetts 3
Mycoplasma_suis_KI3806 1
Mycoplasma_conjunctivae_HRC/581 1
Mycoplasma_haemofelis_Ohio2 2
Mycoplasma_penetrans_HF-2 2
Mycoplasma_pulmonis_UAB_CTIP 1
Mycoplasma_pneumoniae_309 5
Mycoplasma_hyorhinis_GDL-1 1
Mycoplasma_genitalium_G37 2
Mycoplasma_gallisepticum_str._F 1
Conexibacter_woesei_DSM_14684 2
Thermobispora_bispora_DSM_43833 3
Nakamurella_multipartita_DSM_44233 0
Geodermatophilus_obscurus_DSM_43160 1
Frankia_symbiont_of_Datisca_glomerata 1
Thermobifida_fusca_YX 0
Thermomonospora_curvata_DSM_43183 1
Streptosporangium_roseum_DSM_43021 11
Streptomyces_coelicolor_A3(2) 2
Streptomyces_bingchenggensis_BCW-1 2
Streptomyces_violaceusniger_Tu_4113 2
Streptomyces_avermitilis_MA-4680 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Streptomyces_scabiei_87.22 2
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 2
Pseudonocardia_dioxanivorans_CB1190 1
Amycolatopsis_mediterranei_U32 0
Kribbella_flavida_DSM_17836 1
Nocardioides_sp._JS614 1
Verrucosispora_maris_AB-18-032 1
Micromonospora_sp._L5 1
Micromonospora_aurantiaca_ATCC_27029 1
Actinoplanes_sp._N902-109 0
Actinoplanes_sp._SE50/110 1
Actinoplanes_missouriensis_431 1
Gordonia_bronchialis_DSM_43247 1
Rhodococcus_jostii_RHA1 0
Rhodococcus_opacus_B4 0
Rhodococcus_erythropolis_PR4 1
Mycobacterium_abscessus_ATCC_19977 0
Mycobacterium_sp._JLS 1
Corynebacterium_pseudotuberculosis_316 1
Beutenbergia_cavernae_DSM_12333 1
Leifsonia_xyli_subsp._xyli_str._CTCB07 1
Microbacterium_testaceum_StLB037 1
Isoptericola_variabilis_225 1
Cellulomonas_flavigena_DSM_20109 1
Cellulomonas_fimi_ATCC_484 2
[Cellvibrio]_gilvus_ATCC_13127 1
Arthrobacter_phenanthrenivorans_Sphe3 1
Arthrobacter_chlorophenolicus_A6 1
Arthrobacter_aurescens_TC1 1
Arthrobacter_arilaitensis_Re117 1
Arthrobacter_sp._Rue61a 1
Arthrobacter_sp._FB24 2
Mobiluncus_curtisii_ATCC_43063 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 0
Thermomicrobium_roseum_DSM_5159 1
Sphaerobacter_thermophilus_DSM_20745 3
Herpetosiphon_aurantiacus_DSM_785 0
Deinococcus_gobiensis_I-0 0
Deinococcus_maricopensis_DSM_21211 0
Deinococcus_radiodurans_R1 1
Thermus_scotoductus_SA-01 1
Clostridium_thermocellum_ATCC_27405 1
Dehalobacter_sp._DCA 1
Dehalobacter_sp._CF 1
Desulfotomaculum_reducens_MI-1 1
Desulfotomaculum_carboxydivorans_CO-1-SRB 1
Heliobacterium_modesticaldum_Ice1 0
Carboxydothermus_hydrogenoformans_Z-2901 1
Streptococcus_mitis_B6 0
Streptococcus_pneumoniae_P1031 1
Streptococcus_oralis_Uo5 0
Paenibacillus_polymyxa_M1 0
Listeria_welshimeri_serovar_6b_str._SLCC5334 1
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 1
Listeria_ivanovii_subsp._ivanovii_PAM_55 1
Geobacillus_thermoglucosidasius_C56-YS93 1
Lysinibacillus_sphaericus_C3-41 1
Anoxybacillus_flavithermus_WK1 1
Geobacillus_thermodenitrificans_NG80-2 1
Bacillus_cellulosilyticus_DSM_2522 1
Staphylococcus_aureus_subsp._aureus_JH1 2
Staphylococcus_aureus 1
Melioribacter_roseus_P3M 3
Ignavibacterium_album_JCM_16511 4
Chlorobium_limicola_DSM_245 1
Haliscomenobacter_hydrossis_DSM_1100 3
Saprospira_grandis_str._Lewin 2
Niastella_koreensis_GR20-10 2
Chitinophaga_pinensis_DSM_2588 2
Salinibacter_ruber_M8 2
Rhodothermus_marinus_DSM_4252 2
Flexibacter_litoralis_DSM_6794 1
Fibrella_aestuarina 1
Cytophaga_hutchinsonii_ATCC_33406 1
Spirosoma_linguale_DSM_74 1
Runella_slithyformis_DSM_19594 2
Parabacteroides_distasonis_ATCC_8503 4
Tannerella_forsythia_ATCC_43037 3
Paludibacter_propionicigenes_WB4 1
Odoribacter_splanchnicus_DSM_20712 2
Bacteroides_sp._CF50 4
Prevotella_melaninogenica_ATCC_25845 1
Prevotella_intermedia_17 1
Prevotella_denticola_F0289 1
Prevotella_ruminicola_23 1
Porphyromonas_asaccharolytica_DSM_20707 6
Porphyromonas_gingivalis_ATCC_33277 3
Alistipes_finegoldii_DSM_17242 3
Bacteroides_salanitronis_DSM_18170 2
Bacteroides_helcogenes_P_36-108 2
Bacteroides_vulgatus_ATCC_8482 3
Bacteroides_thetaiotaomicron_VPI-5482 3
Bacteroides_fragilis_YCH46 3
Pedobacter_saltans_DSM_12145 2
Solitalea_canadensis_DSM_3403 2
Pedobacter_heparinus_DSM_2366 2
Sphingobacterium_sp._21 1
Fluviicola_taffensis_DSM_16823 3
Owenweeksia_hongkongensis_DSM_17368 5
Lacinutrix_sp._5H-3-7-4 1
Aequorivita_sublithincola_DSM_14238 3
Flavobacteriaceae_bacterium_3519-10 2
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 2
Ornithobacterium_rhinotracheale_DSM_15997 2
Capnocytophaga_canimorsus_Cc5 2
Capnocytophaga_ochracea_DSM_7271 2
Weeksella_virosa_DSM_16922 3
Flavobacterium_indicum_GPTSA100-9 2
Flavobacterium_psychrophilum_JIP02/86 2
Flavobacterium_branchiophilum_FL-15 2
Flavobacterium_columnare_ATCC_49512 2
Flavobacterium_johnsoniae_UW101 1
Simkania_negevensis_Z 2
Isosphaera_pallida_ATCC_43644 1
Planctomyces_brasiliensis_DSM_5305 2
Planctomyces_limnophilus_DSM_3776 1
Rhodopirellula_baltica_SH_1 3
Pirellula_staleyi_DSM_6068 2
Coraliomargarita_akajimensis_DSM_45221 2
Opitutus_terrae_PB90-1 1
Treponema_azotonutricium_ZAS-9 1
Elusimicrobium_minutum_Pei191 1
Candidatus_Chloracidobacterium_thermophilum_B 1
Candidatus_Solibacter_usitatus_Ellin6076 4
Granulicella_mallensis_MP5ACTX8 1
Candidatus_Koribacter_versatilis_Ellin345 1
Acidobacterium_capsulatum_ATCC_51196 1
Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 0
Candidatus_Methylomirabilis_oxyfera 0
Candidatus_Saccharimonas_aalborgensis 1
Bacteriovorax_marinus_SJ 2
Desulfomonile_tiedjei_DSM_6799 1
Desulfobacterium_autotrophicum_HRM2 1
Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 1
Desulfovibrio_africanus_str._Walvis_Bay 1
Haliangium_ochraceum_DSM_14365 3
Sorangium_cellulosum_'So_ce_56' 4
Anaeromyxobacter_sp._Fw109-5 4
Anaeromyxobacter_dehalogenans_2CP-1 1
Stigmatella_aurantiaca_DW4/3-1 4
Corallococcus_coralloides_DSM_2259 9
Myxococcus_xanthus_DK_1622 9
Myxococcus_fulvus_HW-1 5
Dechloromonas_aromatica_RCB 1
Methylibium_petroleiphilum_PM1 1
Burkholderia_xenovorans_LB400 0
Burkholderia_vietnamiensis_G4 1
Burkholderia_gladioli_BSR3 0
Burkholderia_glumae_BGR1 1
Verminephrobacter_eiseniae_EF01-2 1
Delftia_sp._Cs1-4 1
Delftia_acidovorans_SPH-1 1
Polaromonas_naphthalenivorans_CJ2 1
Acidovorax_sp._KKS102 1
Acidovorax_citrulli_AAC00-1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1
Collimonas_fungivorans_Ter331 1
Herbaspirillum_seropedicae_SmR1 0
Achromobacter_xylosoxidans 0
Magnetococcus_marinus_MC-1 1
Parvularcula_bermudensis_HTCC2503 1
Asticcacaulis_excentricus_CB_48 1
Brevundimonas_subvibrioides_ATCC_15264 2
Caulobacter_crescentus_NA1000 1
Phenylobacterium_zucineum_HLK1 1
Erythrobacter_litoralis_HTCC2594 0
Sphingopyxis_alaskensis_RB2256 1
Novosphingobium_aromaticivorans_DSM_12444 1
Sphingobium_sp._SYK-6 1
Zymomonas_mobilis_subsp._mobilis_NCIMB_11163 0
Maricaulis_maris_MCS10 0
Hyphomonas_neptunium_ATCC_15444 1
Dinoroseobacter_shibae_DFL_12 1
Pseudovibrio_sp._FO-BEG1 1
Jannaschia_sp._CCS1 0
Ruegeria_pomeroyi_DSS-3 0
Rhodobacter_capsulatus_SB_1003 1
Rhodospirillum_photometricum_DSM_122 1
Magnetospirillum_magneticum_AMB-1 1
Rhodospirillum_centenum_SW 1
Rhodospirillum_rubrum_F11 0
Azospirillum_lipoferum_4B 1
Azospirillum_sp._B510 1
Azospirillum_brasilense_Sp245 2
Methylobacterium_chloromethanicum_CM4 1
Methylobacterium_populi_BJ001 1
Methylobacterium_nodulans_ORS_2060 0
Sinorhizobium_fredii_NGR234 0
Rhizobium_etli_CIAT_652 1
Rhizobium_leguminosarum_bv._viciae_3841 1
Mesorhizobium_opportunistum_WSM2075 1
Methylocella_silvestris_BL2 0
Rhodopseudomonas_palustris_BisA53 1
Methylocystis_sp._SC2 0
Saccharophagus_degradans_2-40 1
Teredinibacter_turnerae_T7901 2
Vibrio_harveyi_ATCC_BAA-1116 1
Vibrio_parahaemolyticus_RIMD_2210633 1
Vibrio_anguillarum_775 1
Vibrio_vulnificus_MO6-24/O 2
Vibrio_cholerae_O395 1
Photobacterium_profundum_SS9 2
Psychromonas_sp._CNPT3 1
Idiomarina_loihiensis_L2TR 1
Ferrimonas_balearica_DSM_9799 2
Shewanella_piezotolerans_WP3 2
Shewanella_loihica_PV-4 2
Shewanella_halifaxensis_HAW-EB4 2
Shewanella_sediminis_HAW-EB3 3
Shewanella_denitrificans_OS217 2
Shewanella_pealeana_ATCC_700345 2
Shewanella_oneidensis_MR-1 2
Shewanella_baltica_OS185 2
Shewanella_woodyi_ATCC_51908 2
Shewanella_sp._MR-4 2
Shewanella_amazonensis_SB2B 2
Shewanella_violacea_DSS12 2
Shewanella_frigidimarina_NCIMB_400 2
Shewanella_putrefaciens_CN-32 2
Colwellia_psychrerythraea_34H 1
Pseudoalteromonas_haloplanktis_TAC125 1
Glaciecola_nitratireducens_FR1064 1
Alteromonas_macleodii_str._'Deep_ecotype' 1
Kangiella_koreensis_DSM_16069 1
Hahella_chejuensis_KCTC_2396 1
Alcanivorax_borkumensis_SK2 1
Methylococcus_capsulatus_str._Bath 1
Rhodanobacter_denitrificans 2
Frateuria_aurantia_DSM_6220 1
Pseudoxanthomonas_suwonensis_11-1 2
Stenotrophomonas_maltophilia_K279a 2
Xylella_fastidiosa_M23 1
Xanthomonas_albilineans_GPE_PC73 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 1
Xenorhabdus_nematophila_ATCC_19061 1
Edwardsiella_tarda_EIB202 0
Rahnella_sp._Y9602 0
Pantoea_ananatis_LMG_20103 0
Erwinia_sp._Ejp617 0
Erwinia_pyrifoliae_Ep1/96 0
Salmonella_bongori_NCTC_12419 0
Citrobacter_rodentium_ICC168 0
Pseudomonas_syringae_pv._tomato_str._DC3000 1
Pseudomonas_fluorescens_SBW25 1
Pseudomonas_aeruginosa_UCBPP-PA14 0
Methanosaeta_harundinacea_6Ac 1
Methanosarcina_acetivorans_C2A 0
Methanosarcina_barkeri_str._Fusaro 0
Methanospirillum_hungatei_JF-1 1
Halopiger_xanaduensis_SH-6 1
Haloterrigena_turkmenica_DSM_5511 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   14
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   8
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   6
Coccidioides_posadasii_str._Silveira_ 0
Coccidioides_immitis_RMSCC_2394_ 0
Coccidioides_immitis_H538.4_ 0
Histoplasma_capsulatum_H143 1
Histoplasma_capsulatum_H88 2
Histoplasma_capsulatum_G186AR 2
Aspergillus_fumigatus_A1163_ 0
Candida_albicans_WO-1_ 1
Batrachochytrium_dendrobatidis_JEL423_ 0
Batrachochytrium_dendrobatidis_JAM81_ 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   2
Hordeum_vulgare_22   (Domesticated barley)   13
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   11
Trypanosoma_brucei_Lister_427_v4.1 1
Neospora_caninum_Nc-Liverpool_6.2 2
Plasmodium_falciparum_HB3_ 1
Chroococcidiopsis_thermalis_PCC_7203 1
Cyanobium_gracile_PCC_6307 1
Oscillatoria_acuminata_PCC_6304 1
Arthrospira_platensis_NIES-39 2
Cyanothece_sp._PCC_7425 3
Cyanothece_sp._PCC_7424 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1
Stanieria_cyanosphaera_PCC_7437 1
Calothrix_parietina_Calothrix_sp._PCC_6303 1
Candidatus_Phytoplasma_solani_tobfin_28409 1
Candidatus_Phytoplasma_australiense_Strawberry_lethal_yellows_phytoplasma_(CPA)_str._NZSb11 1
Candidatus_Phytoplasma_australiense 1
Ureaplasma_parvum_serovar_3_str._ATCC_700970 2
Mycoplasma_parvum_str._Indiana 2
Mycoplasma_ovis_str._Michigan 3
Mycoplasma_cynos_C142 1
Candidatus_Mycoplasma_haemolamae_str._Purdue 1
Mycoplasma_suis_str._Illinois 1
Mycoplasma_haemofelis_str._Langford_1 3
Mycoplasma_pneumoniae_M129-B7 5
Mycoplasma_pneumoniae_FH 3
Mycoplasma_pneumoniae_M129 4
Mycoplasma_hyorhinis_SK76 1
Mycoplasma_hyorhinis_MCLD 1
Mycoplasma_hyorhinis_HUB-1 1
Mycoplasma_hyorhinis_DBS_1050 1
Mycoplasma_genitalium_M2321 2
Mycoplasma_genitalium_M2288 2
Mycoplasma_genitalium_M6282 3
Mycoplasma_genitalium_M6320 2
Mycoplasma_gallisepticum_NC08_2008.031-4-3P 1
Mycoplasma_gallisepticum_CA06_2006.052-5-2P 1
Mycoplasma_gallisepticum_NC06_2006.080-5-2P 1
Mycoplasma_gallisepticum_WI01_2001.043-13-2P 1
Mycoplasma_gallisepticum_NY01_2001.047-5-1P 1
Mycoplasma_gallisepticum_NC96_1596-4-2P 1
Mycoplasma_gallisepticum_NC95_13295-2-2P 1
Mycoplasma_gallisepticum_VA94_7994-1-7P 1
Mycoplasma_gallisepticum_S6 1
Mycoplasma_gallisepticum_str._R(high) 1
Mycoplasma_gallisepticum_str._R(low) 1
Frankia_sp._EuI1c 0
Streptomyces_rapamycinicus_NRRL_5491 3
Streptomyces_davawensis_JCM_4913 1
Streptomyces_collinus_Tu_365 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 2
Saccharothrix_espanaensis_DSM_44229 2
Amycolatopsis_mediterranei_RB 0
Amycolatopsis_mediterranei_S699 0
Amycolatopsis_mediterranei_S699 0
Amycolatopsis_orientalis_HCCB10007 1
Actinoplanes_friuliensis_DSM_7358 1
Mycobacterium_abscessus_subsp._bolletii_50594 0
Corynebacterium_maris_DSM_45190 1
Corynebacterium_pseudotuberculosis_258 1
Corynebacterium_pseudotuberculosis_Cp162 1
Corynebacterium_pseudotuberculosis_CIP_52.97 1
Clostridium_thermocellum_DSM_1313 1
Enterococcus_faecalis_OG1RF 1
Lactococcus_lactis_subsp._lactis_IO-1 1
Lactococcus_lactis_subsp._cremoris_KW2 1
Streptococcus_pneumoniae_gamPNI0373 1
Streptococcus_pneumoniae_ATCC_700669 1
Streptococcus_pneumoniae_JJA 1
Streptococcus_agalactiae_2-22 1
Listeria_monocytogenes_serotype_4b_str._LL195 1
Listeria_monocytogenes_07PF0776 1
Listeria_monocytogenes_J1-220 1
Listeria_monocytogenes_J1816 1
Listeria_monocytogenes_ATCC_19117 1
Listeria_monocytogenes_L312 1
Listeria_monocytogenes_SLCC2378 1
Listeria_monocytogenes_serotype_4b_str._F2365 1
Staphylococcus_aureus_subsp._aureus_MSHR1132 1
Staphylococcus_aureus_Bmb9393 1
Staphylococcus_aureus_M1 1
Staphylococcus_aureus_08BA02176 1
Staphylococcus_aureus_ST228/18412 1
Staphylococcus_aureus_ST228/18341 1
Staphylococcus_aureus_ST228/16125 1
Staphylococcus_aureus_ST228/16035 1
Staphylococcus_aureus_ST228/15532 1
Staphylococcus_aureus_ST228/10497 1
Staphylococcus_aureus_ST228/10388 1
Staphylococcus_aureus_04-02981 2
Staphylococcus_aureus_subsp._aureus_Z172 1
Staphylococcus_aureus_subsp._aureus_6850 2
Staphylococcus_aureus_subsp._aureus_SA957 2
Staphylococcus_aureus_subsp._aureus_CN1 1
Staphylococcus_aureus_subsp._aureus_SA40 2
Staphylococcus_aureus_subsp._aureus_11819-97 1
Staphylococcus_aureus_subsp._aureus_M013 2
Staphylococcus_aureus_subsp._aureus_HO_5096_0412 1
Staphylococcus_aureus_subsp._aureus_VC40 1
Staphylococcus_aureus_subsp._aureus_T0131 1
Staphylococcus_aureus_subsp._aureus_LGA251 1
Staphylococcus_aureus_subsp._aureus_ECT-R_2 2
Staphylococcus_aureus_subsp._aureus_JKD6159 1
Staphylococcus_aureus_subsp._aureus_ED133 1
Staphylococcus_aureus_subsp._aureus_ED98 1
Staphylococcus_aureus_subsp._aureus_TW20 1
Staphylococcus_aureus_subsp._aureus_55/2053 1
Staphylococcus_aureus_subsp._aureus_TCH60 1
Staphylococcus_aureus_subsp._aureus_str._JKD6008 1
Staphylococcus_aureus_subsp._aureus_71193 1
Staphylococcus_aureus_subsp._aureus_S0385 1
Staphylococcus_aureus_subsp._aureus_str._Newman 1
Staphylococcus_aureus_subsp._aureus_Mu3 2
Staphylococcus_aureus_subsp._aureus_USA300_TCH1516 1
Staphylococcus_aureus_subsp._aureus_USA300_FPR3757 1
Staphylococcus_aureus_subsp._aureus_JH9 2
Staphylococcus_aureus_subsp._aureus_MRSA252 1
Staphylococcus_aureus_subsp._aureus_N315 1
Staphylococcus_aureus_subsp._aureus_Mu50 2
Staphylococcus_aureus_subsp._aureus_COL 1
Staphylococcus_aureus_subsp._aureus_NCTC_8325 1
Salinibacter_ruber_DSM_13855 2
Rhodothermus_marinus_SG0.5JP17-172 2
Echinicola_vietnamensis_DSM_17526 0
Prevotella_sp._oral_taxon_299_str._F0039 1
Porphyromonas_gingivalis_TDC60 3
Porphyromonas_gingivalis_W83 3
Alistipes_shahii_WAL_8301 2
Bacteroides_xylanisolvens_XB1A 3
Bacteroides_fragilis_638R 4
Bacteroides_fragilis_NCTC_9343 3
Nonlabens_dokdonensis_DSW-6 1
Psychroflexus_torquis_ATCC_700755 1
Riemerella_anatipestifer_RA-CH-2 2
Riemerella_anatipestifer_RA-CH-1 2
Riemerella_anatipestifer_RA-GD 2
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 2
Singulisphaera_acidiphila_DSM_18658 2
Campylobacter_jejuni_Waterborne_C.jejuni_Outbreak 1
Campylobacter_jejuni_subsp._jejuni_M1 1
Campylobacter_jejuni_subsp._jejuni_81116 1
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1
Desulfovibrio_desulfuricans_ND132 1
Sorangium_cellulosum_So0157-2 2
Anaeromyxobacter_sp._K 1
Anaeromyxobacter_dehalogenans_2CP-C 1
Myxococcus_stipitatus_DSM_14675 7
Burkholderia_phenoliruptrix_BR3459a 1
Burkholderia_sp._KJ006 1
Burkholderia_ambifaria_MC40-6 1
Caulobacter_crescentus_CB15 0
Zymomonas_mobilis_subsp._mobilis_CP4 0
Zymomonas_mobilis_subsp._mobilis_ATCC_10988 0
Zymomonas_mobilis_subsp._mobilis_ZM4 0
Rhodobacter_sphaeroides_ATCC_17025 1
Magnetospirillum_gryphiswaldense_MSR-1_v2 1
Rhodospirillum_rubrum_ATCC_11170 0
Methylobacterium_extorquens_DM4 1
Sinorhizobium_fredii_HH103 0
Rhizobium_leguminosarum_bv._trifolii_WSM1325 2
Rhodopseudomonas_palustris_BisB18 0
Bradyrhizobium_sp._S23321 0
Bradyrhizobium_sp._BTAi1 0
Vibrio_sp._EJY3 1
Vibrio_parahaemolyticus_BB22OP 1
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 1
Vibrio_anguillarum_Listonella_anguillarum_M3 1
Vibrio_nigripulchritudo_VibrioScope 3
Vibrio_vulnificus_CMCP6 2
Vibrio_vulnificus_YJ016 2
Vibrio_cholerae_LMA3984-4 1
Vibrio_cholerae_M66-2 1
Vibrio_cholerae_O395 1
Vibrio_cholerae_IEC224 1
Vibrio_cholerae_O1_str._2010EL-1786 1
Vibrio_cholerae_MJ-1236 1
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 1
Idiomarina_loihiensis_GSL_199 1
Shewanella_sp._W3-18-1 2
Shewanella_sp._ANA-3 2
Shewanella_baltica_BA175 2
Shewanella_baltica_OS678 2
Shewanella_baltica_OS117 2
Shewanella_baltica_OS223 2
Shewanella_baltica_OS195 2
Shewanella_baltica_OS155 2
Shewanella_sp._MR-7 2
Shewanella_putrefaciens_200 2
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 1
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 1
Alteromonas_macleodii_str._'Ionian_Sea_U8' 1
Alteromonas_macleodii_str._'Ionian_Sea_U7' 1
Alteromonas_macleodii_str._'Ionian_Sea_U4' 1
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 1
Alteromonas_macleodii_AltDE1 1
Alteromonas_macleodii_str._'English_Channel_673' 1
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 1
Alteromonas_macleodii_str._'Black_Sea_11' 1
Alteromonas_macleodii_ATCC_27126 1
Stenotrophomonas_maltophilia_D457 2
Stenotrophomonas_maltophilia_JV3 2
Stenotrophomonas_maltophilia_R551-3 3
Xylella_fastidiosa_subsp._fastidiosa_GB514 1
Xylella_fastidiosa_M12 1
Xylella_fastidiosa_Temecula1 1
Xylella_fastidiosa_9a5c 1
Xanthomonas_axonopodis_pv._citrumelo_F1 1
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 1
Xanthomonas_oryzae_pv._oryzae_KACC_10331 1
Edwardsiella_tarda_C07-087 0
Edwardsiella_tarda_FL6-60 0
Rahnella_aquatilis_HX2 0
Pantoea_ananatis_AJ13355 0
Erwinia_pyrifoliae_DSM_12163 0
Shigella_flexneri_2002017 0
Shigella_flexneri_2a_str._301 0
Salmonella_bongori_N268-08 0
Escherichia_coli_E24377A 0
Escherichia_coli_E._coli_PMV-1 0
Escherichia_coli_JJ1886 0
Escherichia_coli_O104:H4_str._2009EL-2050 0
Escherichia_coli_O104:H4_str._2009EL-2071 0
Escherichia_coli_O104:H4_str._2011C-3493 0
Escherichia_coli_NA114 0
Escherichia_coli_APEC_O1 0
Escherichia_coli_ETEC_H10407 0
Pseudomonas_syringae_pv._syringae_B728a 2
Pseudomonas_monteilii_SB3101 1
Pseudomonas_monteilii_SB3078 1
Pseudomonas_fluorescens_Pf0-1 1
Pseudomonas_aeruginosa_SCV20265 0
Pseudomonas_aeruginosa_MTB-1 0
Pseudomonas_aeruginosa_LES431 0
Pseudomonas_aeruginosa_B136-33 0
Pseudomonas_aeruginosa_PA1R 0
Pseudomonas_aeruginosa_PA1 0
Pseudomonas_aeruginosa_DK2 0
Pseudomonas_aeruginosa_NCGM2.S1 0
Pseudomonas_aeruginosa_M18 0
Pseudomonas_aeruginosa_LESB58 0
Pseudomonas_aeruginosa_PA7 0
Pseudomonas_aeruginosa_PAO1 0
Methylophaga_sp._JAM7 1
Natronococcus_occultus_SP4 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   5
Pan_troglodytes_69_2.1.4   (Chimpanzee)   5
Gorilla_gorilla_69_3.1   (Western gorilla)   5
Pongo_abelii_69_2   (Sumatran orangutan)   3
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   5
Macaca_mulatta_69_1   (Rhesus monkey)   5
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   5
Otolemur_garnettii_69_3   (Small-eared galago)   6
Microcebus_murinus_69_1   (Gray mouse lemur)   2
Rattus_norvegicus_69_3.4   (Norway rat)   7
Mus_musculus_69_38   (House mouse)   8
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   2
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   5
Cavia_porcellus_69_3   (Domestic guinea pig)   3
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Ochotona_princeps_69   (American pika)   3
Tupaia_belangeri_69   (Northern tree shrew)   2
Sus_scrofa_69_10.2   (Pig)   7
Bos_taurus_69_3.1   (Cattle)   6
Vicugna_pacos_69_1   (Alpaca)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   2
Mustela_putorius_furo_69_1.0   (Domestic ferret)   8
Ailuropoda_melanoleuca_69_1   (Giant panda)   8
Canis_familiaris_69_3.1   (Dog)   9
Felis_catus_69   (Domestic cat)   1
Equus_caballus_69_2   (Horse)   4
Myotis_lucifugus_69_2.0   (Little brown bat)   7
Pteropus_vampyrus_69_1   (Large flying fox)   2
Sorex_araneus_69_1   (European shrew)   1
Erinaceus_europaeus_69   (Western European hedgehog)   2
Procavia_capensis_69_1   (Cape rock hyrax)   2
Loxodonta_africana_69_3   (African savanna elephant)   4
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   2
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   2
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   3
Ornithorhynchus_anatinus_69_5   (Platypus)   1
Petromyzon_marinus_69_7.0   (Sea lamprey)   0
Meleagris_gallopavo_69_2   (Turkey)   0
Gallus_gallus_69_2   (Chicken)   0
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   0
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_69_2.0   (Green anole)   0
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_69_1   (Coelacanth)   0
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1
Takifugu_rubripes_69_4   (Torafugu)   2
Oryzias_latipes_69_1   (Japanese medaka)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   3
Oreochromis_niloticus_69_1.0   (Nile tilapia)   3
Danio_rerio_69_9   (Zebrafish)   2
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   0
Ciona_intestinalis_69   (Vase tunicate)   1
Drosophila_melanogaster_69_5   (Fruit fly)   12
Caenorhabditis_elegans_69_215   (Roundworm)   8
Arabidopsis_thaliana_10   (Thale cress)   3

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   14
Homo_sapiens__(NCBI_version)   (Human)   17
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   8
Heliconius_numata__(Incomplete) 1
Malus_x_domestica_(Duplicate)   (Apple)   5
Ricinus_communis__(Early_assembly)   (Castor bean)   2
Nicotiana_benthamiana_0.4.4_(Early_draft) 5
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   4
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   2
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1
NCBI_plasmid_sequences_(Plasmids) 8
NCBI_viral_sequences_(Viral) 97
STRING_v9.0.5_(STRING) 576
UniProt__viral_sequences_(Viral) 384
TargetDB__(Targets) 17
Uniprot_2018_03_genome 64850
NCBI_2017_08_genome 28975
Protozoadb_2010_08_(Protozoadb) 15
Protein_Data_Bank_(all_PDB_sequenc) 40
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 42

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