SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,57756,56672 superfamilies in all genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57756 - Retrovirus zinc finger-like domains
56672 - DNA/RNA polymerases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

Domain combination graphics and links

161 sequences contain the _gap_,57756,56672 domain architecture in all genomes.

Add higher domain architectures which include the chosen architecture.

Click on a domain architecture to see the domain assignment details.
The key to the domain colours is at the bottom of the page.

Perkinsus marinus ATCC 50983 : gi|294873629|ref|XP_002766687.1|

Phytophthora sojae 1.1: jgi|Physo1_1|145497|estExt_fgenesh1_pg.C_14010001

Phytophthora ramorum 1.1: jgi|Phyra1_1|86740|fgenesh1_pg.C_scaffold_1179000001

Phytophthora ramorum 1.1: jgi|Phyra1_1|87571|fgenesh1_pg.C_scaffold_2184000001

Musa balbisiana: ITC1587_Bchr10_P28507

Musa balbisiana: ITC1587_Bchr10_P29864

Musa balbisiana: ITC1587_Bchr1_P02105

Musa balbisiana: ITC1587_Bchr1_P02571

Musa balbisiana: ITC1587_Bchr2_P03036

Musa balbisiana: ITC1587_Bchr2_P03054

Musa balbisiana: ITC1587_Bchr3_P06380

Musa balbisiana: ITC1587_Bchr3_P06416

Musa balbisiana: ITC1587_Bchr3_P06757

Musa balbisiana: ITC1587_Bchr5_P13232

Musa balbisiana: ITC1587_Bchr5_P13587

Musa balbisiana: ITC1587_Bchr7_P19351

Musa balbisiana: ITC1587_Bchr7_P20469

Musa balbisiana: ITC1587_Bchr8_P23656

Musa balbisiana: ITC1587_Bchr9_P27173

Musa balbisiana: ITC1587_BchrUn_random_P35193

Musa balbisiana: ITC1587_BchrUn_random_P35834

Musa balbisiana: ITC1587_BchrUn_random_P36280

Musa balbisiana: ITC1587_BchrUn_random_P36379

Musa balbisiana: ITC1587_BchrUn_random_P37260

Musa balbisiana: ITC1587_BchrUn_random_P38209

Musa balbisiana: ITC1587_BchrUn_random_P38587

Musa balbisiana: ITC1587_BchrUn_random_P39244

Musa balbisiana: ITC1587_BchrUn_random_P39517

Musa balbisiana: ITC1587_BchrUn_random_P39687

Sorghum bicolor : jgi|Sorbi1|5031368|Sb10g010785

Oryza sativa v193: LOC_Os10g19338.1|PACid:21885832

Oryza sativa v193: LOC_Os03g39450.1|PACid:21916803

Oryza sativa v193: LOC_Os12g13780.1|PACid:21937233

Oryza sativa v193: LOC_Os11g40730.1|PACid:21944244

Oryza sativa v193: LOC_Os11g30860.1|PACid:21948279

Oryza sativa v193: LOC_Os11g27700.1|PACid:21946828

Oryza sativa v193: LOC_Os11g12110.1|PACid:21948250

Oryza sativa v193: LOC_Os11g22840.1|PACid:21948648

Oryza sativa v193: LOC_Os03g31930.1|PACid:21915279

Oryza sativa v193: LOC_Os04g13180.1|PACid:21891518

Oryza sativa v193: LOC_Os04g18660.1|PACid:21895521

Oryza sativa v193: LOC_Os01g43210.1|PACid:21909441

Oryza sativa v193: LOC_Os02g18970.1|PACid:21920566

Oryza sativa v193: LOC_Os02g28520.1|PACid:21919715

Oryza sativa v193: LOC_Os05g23110.1|PACid:21943798

Oryza sativa v193: LOC_Os06g24960.1|PACid:21930355

Oryza sativa v193: LOC_Os07g11640.1|PACid:21898300

Oryza sativa v193: LOC_Os07g16700.1|PACid:21899655

Oryza sativa v193: LOC_Os07g17720.1|PACid:21898017

Oryza sativa v193: LOC_Os07g18500.1|PACid:21898969

Oryza sativa v193: LOC_Os07g24850.1|PACid:21900321

Oryza sativa v193: LOC_Os08g02790.1|PACid:21887056

Oryza sativa v193: LOC_Os08g30190.1|PACid:21887450

Oryza sativa v193: LOC_Os07g17810.1|PACid:21901213

Oryza sativa v193: LOC_Os01g31020.1|PACid:21909618

Oryza sativa ssp. japonica 5.0: LOC_Os10g19338.1|13110.m01609|protein

Oryza sativa ssp. japonica 5.0: LOC_Os03g39450.1|13103.m04278|protein

Oryza sativa ssp. japonica 5.0: LOC_Os12g13780.1|13112.m01467|protein

Oryza sativa ssp. japonica 5.0: LOC_Os11g40730.1|13111.m04040|protein

Oryza sativa ssp. japonica 5.0: LOC_Os11g30860.1|13111.m02988|protein

Oryza sativa ssp. japonica 5.0: LOC_Os11g27700.1|13111.m02656|protein

Oryza sativa ssp. japonica 5.0: LOC_Os11g12110.1|13111.m01282|protein

Oryza sativa ssp. japonica 5.0: LOC_Os11g22840.1|13111.m02209|protein

Oryza sativa ssp. japonica 5.0: LOC_Os03g31930.1|13103.m03644|protein

Oryza sativa ssp. japonica 5.0: LOC_Os04g13180.1|13104.m01209|protein

Oryza sativa ssp. japonica 5.0: LOC_Os04g18660.1|13104.m01707|protein

Oryza sativa ssp. japonica 5.0: LOC_Os01g43210.1|13101.m04459|protein

Oryza sativa ssp. japonica 5.0: LOC_Os02g18970.1|13102.m02124|protein

Oryza sativa ssp. japonica 5.0: LOC_Os02g28520.1|13102.m03108|protein

Oryza sativa ssp. japonica 5.0: LOC_Os05g23110.1|13105.m02341|protein

Oryza sativa ssp. japonica 5.0: LOC_Os06g24960.1|13106.m02679|protein

Oryza sativa ssp. japonica 5.0: LOC_Os07g11640.1|13107.m01201|protein

Oryza sativa ssp. japonica 5.0: LOC_Os07g16700.1|13107.m01746|protein

Oryza sativa ssp. japonica 5.0: LOC_Os07g17720.1|13107.m01858|protein

Oryza sativa ssp. japonica 5.0: LOC_Os07g17810.1|13107.m01867|protein

Oryza sativa ssp. japonica 5.0: LOC_Os07g18500.1|13107.m01939|protein

Oryza sativa ssp. japonica 5.0: LOC_Os07g24850.1|13107.m02452|protein

Oryza sativa ssp. japonica 5.0: LOC_Os08g02790.1|13108.m00223|protein

Oryza sativa ssp. japonica 5.0: LOC_Os08g30190.1|13108.m03124|protein

Oryza brachyantha 22: OB0049G10010.1

Oryza brachyantha 22: OB0090G10030.1

Oryza brachyantha 22: OB0152G10010.1

Solanum tuberosum : PGSC0003DMP400060422

Mimulus guttatus v140: mgv1a018902m|PACid:17671807

Populus trichocarpa v156: POPTR_0012s01890.1|PACid:18229930

Prunus persica v139: ppa019720m|PACid:17644014

Prunus persica v139: ppa016726m|PACid:17645459

Prunus persica v139: ppa022462m|PACid:17663121

Prunus persica v139: ppa024387m|PACid:17664339

Cucumis sativus v122: Cucsa.346280.1|PACid:16979602

Cucumis sativus v122: Cucsa.356390.1|PACid:16980297

Glycine max v109: Glyma02g37220.1|PACid:16249331

Theobroma cacao B97-61/B2 v1: Tc02_g020781

Theobroma cacao B97-61/B2 v1: Tc04_g003295

Theobroma cacao B97-61/B2 v1: Tc05_g007411

Theobroma cacao B97-61/B2 v1: Tc09_g018401

Theobroma cacao B97-61/B2 v1: Tc00_g003061

Theobroma cacao B97-61/B2 v1: Tc00_g018291

Theobroma cacao B97-61/B2 v1: Tc00_g027631

Theobroma cacao B97-61/B2 v1: Tc00_g031531

Theobroma cacao B97-61/B2 v1: Tc00_g052262

Theobroma cacao B97-61/B2 v1: Tc00_g062771

Theobroma cacao B97-61/B2 v1: Tc00_g068991

Theobroma cacao B97-61/B2 v1: Tc00_g087184

Theobroma cacao B97-61/B2 v1: Tc01_g016870

Theobroma cacao B97-61/B2 v1: Tc02_g017420

Theobroma cacao B97-61/B2 v1: Tc03_g005330

Theobroma cacao B97-61/B2 v1: Tc05_g012900

Theobroma cacao B97-61/B2 v1: Tc05_g025460

Theobroma cacao B97-61/B2 v1: Tc06_g001980

Theobroma cacao B97-61/B2 v1: Tc07_g013790

Theobroma cacao B97-61/B2 v1: Tc10_g000350

Theobroma cacao B97-61/B2 v1: Tc10_g010040

Theobroma cacao B97-61/B2 v1: Tc00_g003770

Theobroma cacao B97-61/B2 v1: Tc00_g007080

Theobroma cacao B97-61/B2 v1: Tc00_g008070

Theobroma cacao B97-61/B2 v1: Tc00_g009070

Theobroma cacao B97-61/B2 v1: Tc00_g036570

Theobroma cacao B97-61/B2 v1: Tc00_g037340

Theobroma cacao B97-61/B2 v1: Tc00_g041520

Theobroma cacao B97-61/B2 v1: Tc00_g042130

Theobroma cacao B97-61/B2 v1: Tc00_g055470

Theobroma cacao B97-61/B2 v1: Tc00_g067620

Theobroma cacao B97-61/B2 v1: Tc00_g076720

Theobroma cacao B97-61/B2 v1: Tc00_g084970

Dictyostelium purpureum : jgi|Dicpu1|156739|GID1.0047393

Dictyostelium purpureum : jgi|Dicpu1|159084|GID1.0049710

Dictyostelium discoideum: DDB0215166|DDB_G0294338

Schizosaccharomyces japonicus yFS275 : SJAG_05119T0

Pisolithus tinctorius Marx 270 v1.0: jgi|Pisti1|30898|gm1.13517_g

Puccinia graminis f. sp. tritici CRL 75-36-700-3 : PGTT_20475

Amphimedon queenslandica: Aqu1.211037|PACid:15709565

Amphimedon queenslandica: Aqu1.216989|PACid:15715517

Amphimedon queenslandica: Aqu1.220260|PACid:15718788

Hydra vulgaris: gi|449671236|ref|XP_004207454.1|

Hydra vulgaris: gi|449678244|ref|XP_004209040.1|

Acropora digitifera v1.0: adi_v1.18818

Acropora digitifera v1.0: adi_v1.04274

Acropora digitifera v1.0: adi_v1.23557

Acropora digitifera v1.0: adi_v1.24352

Acropora digitifera v1.0: adi_v1.07710

Acropora digitifera v1.0: adi_v1.08025

Acropora digitifera v1.0: adi_v1.13529

Acropora digitifera v1.0: adi_v1.17853

Acropora digitifera v1.0: adi_v1.18257

Thelohanellus kitauei: KII66914

Trichinella spiralis 22: EFV51014

Caenorhabditis briggsae 2: CBG11759

Caenorhabditis briggsae 2: CBG26694

Caenorhabditis japonica : CJA22679

Caenorhabditis japonica : CJA27530

Tribolium castaneum 3.0: TC004412

Tribolium castaneum 3.0: TC006946

Nasonia vitripennis : gi|156540886|ref|XP_001600135.1|

Bombyx mori : Bmb000061

Bombyx mori : Bmb001332

Bombyx mori : Bmb011523

Bombyx mori : Bmb042314

Lepisosteus oculatus 76: ENSLOCP00000010160

Saccoglossus kowalevskii v3.0: Sakowv30014377m

Saccoglossus kowalevskii v3.0: Sakowv30039437m