SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for Colicin D immunity protein superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Colicin D immunity protein domain in that genome.

Complete genomes
Genome     Number   Proteins
Thermoanaerobacterium_xylanolyticum_LX-11 1 1
Thermoanaerobacterium_thermosaccharolyticum_DSM_571 1 1
Desulfovibrio_piezophilus 1 1
Bordetella_petrii_DSM_12804 1 1
Rahnella_sp._Y9602 1 1
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 1 1
Yersinia_pseudotuberculosis_IP_31758 1 1
Serratia_proteamaculans_568 1 1
Pseudomonas_entomophila_L48 1 1

Strains
Genome     Number   Proteins
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 1 1
Thermoanaerobacterium_thermosaccharolyticum_M0795 1 1
Rahnella_aquatilis_HX2 1 1
Yersinia_pseudotuberculosis_PB1/+ 2 2
Yersinia_pseudotuberculosis_YPIII 2 2
Yersinia_pseudotuberculosis_IP_32953 2 2
Yersinia_pestis_biovar_Microtus_str._91001 2 2
Yersinia_pestis_A1122 2 2
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 2 2
Yersinia_pestis_CO92 2 2
Serratia_plymuthica_4Rx13 1 1
Klebsiella_pneumoniae_342 1 1
Escherichia_coli_O111:H-_str._11128 1 1
Pseudomonas_aeruginosa_LES431 1 1
Pseudomonas_aeruginosa_RP73 1 1
Pseudomonas_aeruginosa_B136-33 1 1
Pseudomonas_aeruginosa_DK2 1 1
Pseudomonas_aeruginosa_PA7 1 1

Others
Genome     Number   Proteins
NCBI_plasmid_sequences_(Plasmids) 2 2
STRING_v9.0.5_(STRING) 17 17
Uniprot_2018_03_genome 158 158
NCBI_viral_sequences_(Viral) 1 1
NCBI_2017_08_genome 2763 2763
PDB_chains_(SCOP_1.75)_(PDB) 2 2
Protein_Data_Bank_(all_PDB_sequenc) 3 3
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 9 9

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]