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Domain combinations for Adhesin YadA, collagen-binding domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Adhesin YadA, collagen-binding domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Gorilla_gorilla_76_3.1   (Western gorilla)   1 1
Pongo_abelii_76_2   (Sumatran orangutan)   2 2
Rattus_norvegicus_76_5.0   (Norway rat)   1 1
Ovis_aries_76_3.1   (Sheep)   4 2
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   2 2
Macropus_eugenii_76_1.0   (Tammar wallaby)   1 1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1 1
Saccoglossus_kowalevskii_v3.0 137 108
Petromyzon_marinus_76_7.0   (Sea lamprey)   5 3
Gallus_gallus_76_4   (Chicken)   1 1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   2 2
Ficedula_albicollis_76_1.0   (Collared flycatcher)   3 2
Astyanax_mexicanus_76   (Mexican tetra)   2 2
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1 1
Adineta_vaga 1 1
Octopus_bimaculoides_280 15 15
Lottia_gigantea_   (Owl limpet)   3 3
Helobdella_robusta_ 2 2
Capitella_sp._I_ 5 4
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1 1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3 3
Lucilia_cuprina   (Australian sheep blowfly)   3 3
Drosophila_mojavensis_1.3 1 1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   4 4
Acyrthosiphon_pisum_   (Pea aphid)   1 1
Rhodnius_prolixus_22 4 4
Daphnia_pulex_   (Common water flea)   1 1
Strigamia_maritima_22 1 1
Meloidogyne_incognita_   (Southern root-knot nematode)   1 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1 1
Caenorhabditis_japonica_ 4 2
Caenorhabditis_remanei_ 4 2
Caenorhabditis_briggsae_2 7 7
Mnemiopsis_leidyi   (Sea walnut)   3 3
Nematostella_vectensis_1.0   (Starlet sea anemone)   40 36
Hydra_vulgaris 2 2
Amphimedon_queenslandica 2 2
Monosiga_brevicollis_ 2 1
Sphaeroforma_arctica_JP610_ 10 10
Capsaspora_owczarzaki_ATCC_30864_ 1 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 1 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   3 3
Schizophyllum_commune_ 1 1
Punctularia_strigosozonata_v1.0 2 2
Daldinia_eschscholzii_EC12_v1.0 1 1
Verticillium_dahliae_VdLs.17_ 1 1
Septoria_musiva_v1.0 1 1
Mycosphaerella_fijiensis_CIRAD86_ 2 2
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1 1
Selaginella_moellendorffii_ 2 2
Picea_abies   (Norway spruce)   1 1
Eucalyptus_grandis_v201   (Rose gum)   2 2
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1 1
Medicago_truncatula_   (Barrel medic)   1 1
Triticum_urartu_22 14 14
Triticum_aestivum_22   (Bread wheat)   26 26
Aegilops_tauschii_22 15 15
Brachypodium_distachyon_   (Stiff brome)   6 6
Oryza_barthii_22   (African wild rice)   1 1
Oryza_punctata_22 1 1
Oryza_brachyantha_22   (Malo sina)   2 2
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1 1
Panicum_virgatum_v202   (Switchgrass)   5 5
Setaria_italica_v164   (Foxtail millet)   3 2
Sorghum_bicolor_   (Sorghum)   1 1
Physcomitrella_patens 1 1
Bathycoccus_prasinos_ 2 1
Micromonas_sp._RCC299_ 3 1
Micromonas_pusilla_CCMP1545_v3.0 4 1
Thecamonas_trahens_ATCC_50062_ 1 1
Phytophthora_sojae_1.1 1 1
Phytophthora_capsici_ 10 3
Hyaloperonospora_arabidopsidis_22 1 1
Fragilariopsis_cylindrus 5 4
Perkinsus_marinus_ATCC_50983_ 1 1
Cryptosporidium_muris 1 1
Plasmodium_falciparum_3D7_ 6 6
Plasmodium_vivax_SaI-1_7.0 1 1
Plasmodium_knowlesi_strain_H_ 1 1
Guillardia_theta_CCMP2712_v1.0_ 3 3
Emiliania_huxleyi_CCMP1516_ 8 7
Thermosynechococcus_sp._NK55 6 2
Thermosynechococcus_elongatus_BP-1 2 1
Rivularia_sp._PCC_7116 1 1
Nostoc_sp._PCC_7120 3 2
Nostoc_sp._PCC_7524 1 1
Slackia_heliotrinireducens_DSM_20476 2 1
Kineococcus_radiotolerans_SRS30216 2 1
Kitasatospora_setae_KM-6054 1 1
Pseudonocardia_dioxanivorans_CB1190 1 1
Kribbella_flavida_DSM_17836 1 1
Nocardioides_sp._JS614 1 1
Propionibacterium_propionicum_F0230a 1 1
Microlunatus_phosphovorus_NM-1 2 2
Actinoplanes_sp._SE50/110 1 1
Corynebacterium_ulcerans_0102 1 1
Corynebacterium_glutamicum_R 1 1
Sanguibacter_keddieii_DSM_10542 1 1
Microbacterium_testaceum_StLB037 1 1
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 2 1
Jonesia_denitrificans_DSM_20603 1 1
Brachybacterium_faecium_DSM_4810 1 1
Xylanimonas_cellulosilytica_DSM_15894 1 1
[Cellvibrio]_gilvus_ATCC_13127 2 1
Arthrobacter_arilaitensis_Re117 1 1
Rothia_mucilaginosa_DY-18 1 1
Rothia_dentocariosa_ATCC_17931 2 1
Micrococcus_luteus_NCTC_2665 1 1
Arcanobacterium_haemolyticum_DSM_20595 1 1
Mobiluncus_curtisii_ATCC_43063 2 1
Roseiflexus_castenholzii_DSM_13941 1 1
Deinococcus_proteolyticus_MRP 2 1
Veillonella_parvula_DSM_2008 41 10
Megasphaera_elsdenii_DSM_20460 18 9
Acidaminococcus_intestini_RyC-MR95 16 7
Acidaminococcus_fermentans_DSM_20731 20 4
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 2 1
Eubacterium_siraeum 2 2
Ruminococcus_bromii 1 1
Thermaerobacter_marianensis_DSM_12885 1 1
Acetobacterium_woodii_DSM_1030 1 1
Eubacterium_limosum_KIST612 1 1
Clostridium_lentocellum_DSM_5427 1 1
Eubacterium_rectale_M104/1 1 1
Coprococcus_sp._ART55/1 1 1
Roseburia_hominis_A2-183 1 1
Roseburia_intestinalis 2 1
Clostridium_acetobutylicum_ATCC_824 1 1
Thermoanaerobacter_italicus_Ab9 1 1
Leuconostoc_sp._C2 1 1
Leuconostoc_kimchii_IMSNU_11154 1 1
Leuconostoc_citreum_KM20 1 1
Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293 1 1
Leuconostoc_gasicomitatum_LMG_18811 1 1
Lactobacillus_casei_ATCC_334 1 1
Lactobacillus_johnsonii_FI9785 1 1
Lactobacillus_ruminis_ATCC_27782 1 1
Lactobacillus_plantarum_JDM1 1 1
Lactobacillus_brevis_ATCC_367 2 2
Lactobacillus_acidophilus_30SC 1 1
Streptococcus_sp._I-G2 1 1
Streptococcus_gallolyticus_UCN34 1 1
Streptococcus_pseudopneumoniae_IS7493 1 1
Streptococcus_pasteurianus_ATCC_43144 2 1
Streptococcus_infantarius_subsp._infantarius_CJ18 1 1
Streptococcus_macedonicus_ACA-DC_198 1 1
Streptococcus_agalactiae_A909 1 1
Streptococcus_suis_P1/7 2 1
Exiguobacterium_sp._AT1b 2 1
Exiguobacterium_sibiricum_255-15 1 1
Paenibacillus_mucilaginosus_3016 3 1
Listeria_welshimeri_serovar_6b_str._SLCC5334 1 1
Listeria_innocua_Clip11262 1 1
Listeria_seeligeri_serovar_1/2b_str._SLCC3954 2 1
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 2 1
Listeria_ivanovii_subsp._ivanovii_PAM_55 1 1
Solibacillus_silvestris_StLB046 1 1
Geobacillus_thermoglucosidasius_C56-YS93 1 1
Anoxybacillus_flavithermus_WK1 1 1
Geobacillus_thermoleovorans_CCB_US3_UF5 1 1
Geobacillus_sp._GHH01 1 1
Geobacillus_sp._WCH70 1 1
Bacillus_halodurans_C-125 2 1
Bacillus_weihenstephanensis_KBAB4 1 1
Bacillus_thuringiensis_str._Al_Hakam 3 3
Bacillus_cereus_03BB102 3 3
Bacillus_anthracis_str._A0248 1 1
Bacillus_coagulans_2-6 2 2
Gemmatimonas_aurantiaca_T-27 1 1
Dyadobacter_fermentans_DSM_18053 5 5
Pedobacter_saltans_DSM_12145 1 1
Zunongwangia_profunda_SM-A87 5 3
Aequorivita_sublithincola_DSM_14238 3 2
Ornithobacterium_rhinotracheale_DSM_15997 2 1
Parachlamydia_acanthamoebae_UV-7 1 1
Candidatus_Koribacter_versatilis_Ellin345 2 2
Streptobacillus_moniliformis_DSM_12112 72 22
Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 4 3
Acidithiobacillus_ferrooxidans_ATCC_53993 2 1
Campylobacter_hominis_ATCC_BAA-381 11 3
Desulfobacca_acetoxidans_DSM_11109 1 1
Pelobacter_carbinolicus_DSM_2380 2 1
Stigmatella_aurantiaca_DW4/3-1 1 1
Neisseria_lactamica_020-06 10 5
Neisseria_gonorrhoeae_NCCP11945 3 2
beta_proteobacterium_CB 2 1
Thiomonas_arsenitoxydans 2 1
Burkholderia_rhizoxinica_HKI_454 2 2
Burkholderia_phytofirmans_PsJN 57 6
Burkholderia_phymatum_STM815 60 6
Burkholderia_xenovorans_LB400 49 4
Ralstonia_eutropha_JMP134 4 2
Burkholderia_sp._RPE64 3 2
Burkholderia_sp._CCGE1002 7 3
Burkholderia_thailandensis_E264 13 5
Burkholderia_pseudomallei_1106a 27 10
Burkholderia_mallei_SAVP1 13 6
Burkholderia_ambifaria_AMMD 35 6
Burkholderia_cenocepacia_HI2424 34 6
Burkholderia_multivorans_ATCC_17616 8 2
Burkholderia_vietnamiensis_G4 9 2
Burkholderia_gladioli_BSR3 34 7
Burkholderia_glumae_BGR1 24 5
Variovorax_paradoxus_S110 19 2
Collimonas_fungivorans_Ter331 39 10
Pusillimonas_sp._T7-7 5 1
Advenella_kashmirensis_WT001 3 2
Taylorella_asinigenitalis_MCE3 27 9
Taylorella_equigenitalis_MCE9 33 9
Achromobacter_xylosoxidans_A8 12 2
Methylovorus_glucosetrophus_SIP3-4 1 1
Erythrobacter_litoralis_HTCC2594 8 1
Hyphomonas_neptunium_ATCC_15444 3 1
Jannaschia_sp._CCS1 1 1
Micavibrio_aeruginosavorus_ARL-13 3 1
Ehrlichia_ruminantium_str._Gardel 1 1
Starkeya_novella_DSM_506 1 1
Methylobacterium_nodulans_ORS_2060 9 1
Methylobacterium_radiotolerans_JCM_2831 2 2
Brucella_microti_CCM_4915 6 2
Brucella_canis_ATCC_23365 3 1
Brucella_suis_ATCC_23445 4 1
Brucella_ovis_ATCC_25840 3 1
Brucella_abortus_S19 3 1
Sinorhizobium_medicae_WSM419 2 1
Sinorhizobium_meliloti_AK83 7 1
Agrobacterium_radiobacter_K84 36 2
Mesorhizobium_opportunistum_WSM2075 10 2
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 9 1
Mesorhizobium_loti_MAFF303099 10 1
Nitrobacter_hamburgensis_X14 1 1
Bradyrhizobium_japonicum_USDA_110 9 4
Methylocystis_sp._SC2 2 2
Bartonella_tribocorum_CIP_105476 3 1
Bartonella_clarridgeiae_73 10 3
Bartonella_henselae_str._Houston-1 9 2
Bartonella_grahamii_as4aup 22 5
Bartonella_quintana_str._Toulouse 4 3
Bartonella_bacilliformis_KC583 9 3
Aggregatibacter_aphrophilus_NJ8700 12 3
Aggregatibacter_actinomycetemcomitans_D7S-1 3 1
Haemophilus_somnus_129PT 64 12
Gallibacterium_anatis_UMN179 16 6
Pasteurella_multocida_subsp._multocida_str._3480 14 4
Haemophilus_parainfluenzae_T3T1 16 4
Actinobacillus_succinogenes_130Z 26 2
Actinobacillus_pleuropneumoniae_serovar_5b_str._L20 21 2
Halomonas_elongata_DSM_2581 3 1
Frateuria_aurantia_DSM_6220 2 1
Pseudoxanthomonas_suwonensis_11-1 2 1
Stenotrophomonas_maltophilia_K279a 30 4
Xylella_fastidiosa_M23 25 3
Xanthomonas_axonopodis_pv._citri_str._306 18 2
Xanthomonas_albilineans_GPE_PC73 23 3
Xanthomonas_oryzae_pv._oryzae_PXO99A 13 2
Xanthomonas_campestris_pv._campestris_str._B100 13 1
Photorhabdus_asymbiotica 1 1
Photorhabdus_luminescens_subsp._laumondii_TTO1 1 1
Xenorhabdus_bovienii_SS-2004 1 1
Xenorhabdus_nematophila_ATCC_19061 1 1
Proteus_mirabilis_HI4320 2 2
Edwardsiella_tarda_EIB202 2 2
Yersinia_pseudotuberculosis_IP_31758 10 4
Yersinia_pestis_Pestoides_F 7 4
Yersinia_enterocolitica_subsp._enterocolitica_8081 1 1
secondary_endosymbiont_of_Ctenarytaina_eucalypti 1 1
Shigella_sonnei_Ss046 10 1
Shigella_flexneri_5_str._8401 8 2
Shigella_dysenteriae_Sd197 12 3
Shigella_boydii_CDC_3083-94 7 2
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 11 1
Enterobacter_aerogenes_KCTC_2190 1 1
Escherichia_fergusonii_ATCC_35469 14 1
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 10 1
Psychrobacter_sp._G 9 3
Psychrobacter_cryohalolentis_K5 11 3
Moraxella_catarrhalis_RH4 6 3
Acinetobacter_baumannii_ATCC_17978 8 1
Acinetobacter_sp._ADP1 6 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   2 2
Hordeum_vulgare_22   (Domesticated barley)   5 5
Plasmodium_falciparum_HB3_ 5 5
Plasmodium_falciparum_Dd2_ 1 1
Chroococcidiopsis_thermalis_PCC_7203 1 1
Synechococcus_sp._JA-3-3Ab 1 1
Synechococcus_sp._RCC307 12 4
Synechococcus_sp._WH_7803 2 1
Cyanothece_sp._PCC_7822 1 1
Cyanothece_sp._PCC_7424 1 1
Anabaena_cylindrica_PCC_7122 1 1
Streptomyces_fulvissimus_DSM_40593 1 1
Propionibacterium_acidipropionici_ATCC_4875 1 1
Actinoplanes_friuliensis_DSM_7358 1 1
Corynebacterium_ulcerans_BR-AD22 3 2
Corynebacterium_glutamicum_MB001 1 1
Corynebacterium_glutamicum_SCgG2 1 1
Corynebacterium_glutamicum_SCgG1 1 1
Corynebacterium_glutamicum_ATCC_13032 1 1
Corynebacterium_glutamicum_ATCC_13032 1 1
Corynebacterium_glutamicum_ATCC_13032 1 1
Clavibacter_michiganensis_subsp._sepedonicus 1 1
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 1 1
Gardnerella_vaginalis_HMP9231 1 1
Clostridium_sp._SY8519 1 1
Clostridium_acetobutylicum_DSM_1731 1 1
Clostridium_acetobutylicum_EA_2018 1 1
Melissococcus_plutonius_ATCC_35311 1 1
Leuconostoc_mesenteroides_subsp._mesenteroides_J18 2 2
Leuconostoc_gelidum_JB7 1 1
Lactobacillus_paracasei_subsp._paracasei_8700:2 1 1
Lactobacillus_casei_LOCK919 3 2
Lactobacillus_casei_W56 1 1
Lactobacillus_casei_LC2W 1 1
Lactobacillus_casei_BD-II 1 1
Lactobacillus_casei_BL23 1 1
Lactobacillus_casei_str._Zhang 2 1
Lactobacillus_salivarius_UCC118 2 1
Lactobacillus_amylovorus_GRL_1112 1 1
Lactobacillus_plantarum_16 2 1
Lactobacillus_plantarum_ZJ316 3 2
Lactobacillus_plantarum_subsp._plantarum_ST-III 2 1
Lactobacillus_plantarum_subsp._plantarum_P-8 1 1
Lactobacillus_plantarum_WCFS1 2 1
Lactobacillus_helveticus_R0052 1 1
Lactobacillus_helveticus_CNRZ32 1 1
Lactobacillus_brevis_KB290 1 1
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_BAA-2069 1 1
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_43143 1 1
Streptococcus_lutetiensis_033 1 1
Streptococcus_iniae_SF1 1 1
Streptococcus_parasanguinis_FW213 1 1
Streptococcus_agalactiae_ILRI112 1 1
Streptococcus_agalactiae_ILRI005 1 1
Streptococcus_agalactiae_09mas018883 1 1
Streptococcus_agalactiae_2-22 1 1
Streptococcus_agalactiae_SA20-06 1 1
Streptococcus_agalactiae_GD201008-001 1 1
Streptococcus_agalactiae_NEM316 1 1
Streptococcus_agalactiae_2603V/R 1 1
Streptococcus_suis_T15 2 1
Streptococcus_suis_TL13 1 1
Streptococcus_suis_SC070731 2 1
Streptococcus_suis_S735 2 1
Streptococcus_suis_ST3 2 2
Streptococcus_suis_D9 1 1
Streptococcus_suis_SS12 2 1
Streptococcus_suis_D12 1 1
Streptococcus_suis_ST1 1 1
Streptococcus_suis_A7 2 1
Streptococcus_suis_JS14 2 1
Streptococcus_suis_BM407 2 1
Streptococcus_suis_SC84 2 1
Streptococcus_suis_GZ1 2 1
Streptococcus_suis_98HAH33 2 1
Streptococcus_suis_05ZYH33 2 1
Exiguobacterium_antarcticum_B7 1 1
Paenibacillus_sp._Y412MC10 1 1
Paenibacillus_mucilaginosus_KNP414 3 1
Paenibacillus_mucilaginosus_K02 3 1
Paenibacillus_larvae_subsp._larvae_DSM_25430 2 1
Listeria_monocytogenes_EGD_sequence 2 1
Listeria_monocytogenes_N53-1 1 1
Listeria_monocytogenes_La111 2 1
Listeria_monocytogenes_serotype_4b_str._LL195 2 1
Listeria_monocytogenes_07PF0776 2 1
Listeria_monocytogenes_M7 2 1
Listeria_monocytogenes_J1-220 2 1
Listeria_monocytogenes_J1816 2 1
Listeria_monocytogenes_SLCC2376 2 1
Listeria_monocytogenes_SLCC5850 2 1
Listeria_monocytogenes_ATCC_19117 2 1
Listeria_monocytogenes_L312 2 1
Listeria_monocytogenes_SLCC2479 2 1
Listeria_monocytogenes_SLCC7179 2 1
Listeria_monocytogenes_SLCC2540 2 1
Listeria_monocytogenes_SLCC2378 2 1
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 2 1
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 2 1
Listeria_monocytogenes_serotype_7_str._SLCC2482 2 1
Listeria_monocytogenes_08-5578 2 1
Listeria_monocytogenes_08-5923 2 1
Listeria_monocytogenes_L99 2 1
Listeria_monocytogenes_HCC23 2 1
Listeria_monocytogenes_10403S 2 1
Listeria_monocytogenes_J0161 2 1
Listeria_monocytogenes_Finland_1998 2 1
Listeria_monocytogenes_FSL_R2-561 2 1
Listeria_monocytogenes_serotype_4b_str._F2365 2 1
Listeria_monocytogenes_EGD-e 2 1
Geobacillus_sp._C56-T3 1 1
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 1 1
Bacillus_toyonensis_BCT-7112 4 3
Bacillus_thuringiensis_HD-771 3 3
Bacillus_thuringiensis_HD-789 3 3
Bacillus_thuringiensis_MC28 3 3
Bacillus_thuringiensis_serovar_chinensis_CT-43 2 2
Bacillus_thuringiensis_YBT-1518 3 3
Bacillus_thuringiensis_Bt407 2 2
Bacillus_thuringiensis_serovar_konkukian_str._97-27 3 3
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 4 3
Bacillus_thuringiensis_BMB171 3 3
Bacillus_thuringiensis_serovar_finitimus_YBT-020 3 3
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 2 2
Bacillus_cereus_FRI-35 3 3
Bacillus_cereus_biovar_anthracis_str._CI 3 3
Bacillus_cereus_AH820 2 2
Bacillus_cereus_AH187 3 3
Bacillus_cereus_B4264 3 3
Bacillus_cereus_G9842 2 2
Bacillus_cereus_Q1 3 3
Bacillus_cereus_F837/76 3 3
Bacillus_cereus_NC7401 3 2
Bacillus_cereus_E33L 2 2
Bacillus_cereus_ATCC_14579 3 2
Bacillus_cereus_ATCC_10987 2 2
Bacillus_anthracis_str._H9401 2 2
Bacillus_anthracis_str._CDC_684 2 2
Bacillus_anthracis_str._'Ames_Ancestor' 1 1
Bacillus_anthracis_str._Sterne 1 1
Bacillus_anthracis_str._Ames 1 1
Bacillus_coagulans_36D1 2 2
Nonlabens_dokdonensis_DSW-6 3 2
Riemerella_anatipestifer_RA-CH-1 2 1
Fusobacterium_nucleatum_subsp._vincentii_3_1_36A2 4 2
Fusobacterium_nucleatum_subsp._animalis_4_8 8 3
Acidithiobacillus_ferrooxidans_ATCC_23270 2 1
Sorangium_cellulosum_So0157-2 1 1
Myxococcus_stipitatus_DSM_14675 1 1
Neisseria_gonorrhoeae_TCDC-NG08107 3 2
Neisseria_gonorrhoeae_FA_1090 3 2
Burkholderia_phenoliruptrix_BR3459a 40 6
Pandoraea_pnomenusa_3kgm 16 3
Ralstonia_solanacearum_FQY_4 5 2
Ralstonia_solanacearum_Po82 4 1
Ralstonia_solanacearum_PSI07 4 1
Ralstonia_solanacearum_GMI1000 5 1
Burkholderia_sp._YI23 5 1
Burkholderia_sp._CCGE1003 30 6
Burkholderia_sp._CCGE1001 34 5
Burkholderia_sp._KJ006 16 6
Burkholderia_thailandensis_MSMB121 19 4
Burkholderia_pseudomallei_MSHR305 19 6
Burkholderia_pseudomallei_NCTC_13179 14 5
Burkholderia_pseudomallei_BPC006 24 11
Burkholderia_pseudomallei_1026b 24 7
Burkholderia_pseudomallei_MSHR346 17 4
Burkholderia_pseudomallei_668 26 11
Burkholderia_pseudomallei_1710b 33 10
Burkholderia_pseudomallei_K96243 33 8
Burkholderia_mallei_NCTC_10229 15 6
Burkholderia_mallei_NCTC_10247 20 8
Burkholderia_mallei_ATCC_23344 22 7
Burkholderia_lata 30 6
Burkholderia_ambifaria_MC40-6 22 5
Burkholderia_cenocepacia_MC0-3 52 8
Burkholderia_cenocepacia_AU_1054 22 4
Burkholderia_cenocepacia_J2315 43 7
Burkholderia_multivorans_ATCC_17616 8 2
Burkholderia_cepacia_GG4 9 2
Variovorax_paradoxus_B4 19 3
Variovorax_paradoxus_EPS 10 4
Taylorella_asinigenitalis_14/45 32 10
Taylorella_equigenitalis_14/56 45 12
Taylorella_equigenitalis_ATCC_35865 35 9
Paracoccus_aminophilus_JCM_7686 11 1
Micavibrio_aeruginosavorus_EPB 5 2
Ehrlichia_ruminantium_str._Welgevonden 1 1
Ehrlichia_ruminantium_str._Welgevonden 1 1
Brucella_ceti_TE10759-12 4 1
Brucella_ceti_TE28753-12 4 1
Brucella_canis_HSK_A52141 4 1
Brucella_suis_VBI22 4 1
Brucella_suis_1330 4 1
Brucella_suis_1330 4 1
Brucella_melitensis_NI 5 2
Brucella_melitensis_M5-90 4 2
Brucella_melitensis_M28 4 2
Brucella_melitensis_bv._1_str._16M 5 2
Brucella_abortus_A13334 7 1
Brucella_melitensis_biovar_Abortus_2308 8 1
Brucella_abortus_bv._1_str._9-941 6 1
Sinorhizobium_meliloti_2011 7 1
Sinorhizobium_meliloti_GR4 8 1
Sinorhizobium_meliloti_Rm41 7 2
Sinorhizobium_meliloti_SM11 7 1
Sinorhizobium_meliloti_BL225C 7 2
Sinorhizobium_meliloti_1021 7 1
Rhizobium_tropici_CIAT_899 8 1
Mesorhizobium_australicum_WSM2073 8 1
Rhodopseudomonas_palustris_HaA2 2 2
Bradyrhizobium_sp._S23321 3 2
Bartonella_australis_Aust/NH1 13 2
Bartonella_vinsonii_subsp._berkhoffii_str._Winnie 8 2
Bartonella_quintana_RM-11 4 3
Mannheimia_succiniciproducens_MBEL55E 22 1
Bibersteinia_trehalosi_USDA-ARS-USMARC-192 33 6
Aggregatibacter_actinomycetemcomitans_ANH9381 5 1
Aggregatibacter_actinomycetemcomitans_D11S-1 6 1
Haemophilus_somnus_2336 79 16
Mannheimia_haemolytica_USMARC_2286 16 6
Mannheimia_haemolytica_M42548 17 6
Mannheimia_haemolytica_D174 17 6
Mannheimia_haemolytica_D171 20 9
Mannheimia_haemolytica_D153 17 6
Mannheimia_haemolytica_USDA-ARS-USMARC-183 17 7
Mannheimia_haemolytica_USDA-ARS-USMARC-185 17 6
Pasteurella_multocida_36950 4 1
Pasteurella_multocida_subsp._multocida_str._HN06 14 4
Pasteurella_multocida_subsp._multocida_str._Pm70 12 2
Haemophilus_parasuis_ZJ0906 38 16
Haemophilus_influenzae_KR494 8 7
Haemophilus_influenzae_F3047 16 6
Haemophilus_influenzae_F3031 12 4
Haemophilus_influenzae_10810 2 1
Haemophilus_influenzae_PittGG 1 1
Haemophilus_influenzae_R2846 3 2
Actinobacillus_suis_H91-0380 28 4
Actinobacillus_pleuropneumoniae_serovar_7_str._AP76 21 4
Alcanivorax_dieselolei_B5 16 1
Stenotrophomonas_maltophilia_D457 21 3
Stenotrophomonas_maltophilia_JV3 24 3
Stenotrophomonas_maltophilia_R551-3 25 3
Xylella_fastidiosa_subsp._fastidiosa_GB514 24 3
Xylella_fastidiosa_M12 17 3
Xylella_fastidiosa_Temecula1 24 3
Xylella_fastidiosa_9a5c 26 3
Xanthomonas_citri_subsp._citri_Aw12879 18 2
Xanthomonas_campestris_pv._vesicatoria_str._85-10 19 2
Xanthomonas_axonopodis_pv._citrumelo_F1 19 2
Xanthomonas_axonopodis_Xac29-1 5 1
Xanthomonas_oryzae_pv._oryzicola_BLS256 20 3
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 13 2
Xanthomonas_oryzae_pv._oryzae_KACC_10331 13 2
Xanthomonas_campestris_pv._raphani_756C 13 1
Xanthomonas_campestris_pv._campestris_str._8004 14 1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 14 1
Proteus_mirabilis_BB2000 1 1
Edwardsiella_tarda_C07-087 2 2
Edwardsiella_tarda_FL6-60 2 2
Yersinia_pseudotuberculosis_PB1/+ 11 5
Yersinia_pseudotuberculosis_YPIII 9 3
Yersinia_pseudotuberculosis_IP_32953 9 5
Yersinia_pestis_biovar_Microtus_str._91001 1 1
Yersinia_pestis_A1122 6 3
Yersinia_pestis_Z176003 10 5
Yersinia_pestis_D182038 10 5
Yersinia_pestis_D106004 10 5
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 9 4
Yersinia_pestis_Nepal516 9 4
Yersinia_pestis_Antiqua 10 5
Yersinia_pestis_Angola 6 2
Yersinia_pestis_CO92 5 2
Yersinia_pestis_KIM10+ 9 4
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 1 1
Yersinia_enterocolitica_subsp._palearctica_Y11 1 1
Shigella_sonnei_53G 10 1
Shigella_flexneri_2a_str._301 10 2
Shigella_dysenteriae_1617 12 4
Shigella_boydii_Sb227 10 2
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 6 1
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 11 1
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 11 1
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 11 1
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 11 1
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 11 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 11 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 11 1
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 10 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 11 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 11 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 11 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 11 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 11 1
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 10 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 11 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 11 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 11 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 11 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 11 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 8 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 9 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 9 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 9 1
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 12 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 11 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 11 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 11 1
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 11 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 11 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 11 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 11 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 10 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 11 1
Escherichia_coli_E24377A 9 1
Escherichia_coli_E._coli_PMV-1 11 1
Escherichia_coli_JJ1886 13 1
Escherichia_coli_LY180 9 1
Escherichia_coli_APEC_O78 9 1
Escherichia_coli_O7:K1_str._CE10 12 1
Escherichia_coli_O104:H4_str._2009EL-2050 9 1
Escherichia_coli_O104:H4_str._2009EL-2071 9 1
Escherichia_coli_O104:H4_str._2011C-3493 9 1
Escherichia_coli_NA114 13 1
Escherichia_coli_P12b 11 1
Escherichia_coli_str._'clone_D_i2' 11 1
Escherichia_coli_str._'clone_D_i14' 11 1
Escherichia_coli_UM146 12 2
Escherichia_coli_042 11 1
Escherichia_coli_Xuzhou21 9 1
Escherichia_coli_IHE3034 11 1
Escherichia_coli_O83:H1_str._NRG_857C 13 1
Escherichia_coli_ABU_83972 11 1
Escherichia_coli_KO11FL 9 1
Escherichia_coli_KO11FL 9 1
Escherichia_coli_LF82 13 1
Escherichia_coli_ED1a 12 2
Escherichia_coli_55989 9 1
Escherichia_coli_S88 11 1
Escherichia_coli_IAI1 9 1
Escherichia_coli_W 9 1
Escherichia_coli_W 9 1
Escherichia_coli_BL21(DE3) 10 1
Escherichia_coli_BL21(DE3) 10 1
Escherichia_coli_SMS-3-5 12 2
Escherichia_coli_SE15 13 1
Escherichia_coli_SE11 9 1
Escherichia_coli_APEC_O1 11 1
Escherichia_coli_O103:H2_str._12009 9 1
Escherichia_coli_UTI89 12 2
Escherichia_coli_536 14 2
Escherichia_coli_HS 11 1
Escherichia_coli_O55:H7_str._CB9615 9 1
Escherichia_coli_O26:H11_str._11368 9 1
Escherichia_coli_CFT073 11 1
Escherichia_coli_O111:H-_str._11128 9 1
Escherichia_coli_O157:H7_str._TW14359 9 1
Escherichia_coli_O157:H7_str._EC4115 9 1
Escherichia_coli_O157:H7_str._Sakai 9 1
Escherichia_coli_O157:H7_str._EDL933 9 1
Escherichia_coli_B_str._REL606 10 1
Enterobacter_cloacae_SCF1 9 1
Pseudomonas_denitrificans_ATCC_13867 11 1
Pseudomonas_aeruginosa_PA7 1 1
Acinetobacter_genomosp._13TU__RUH2624 13 2
Acinetobacter_baumannii_ZW85-1 11 1
Acinetobacter_baumannii_TYTH-1 11 1
Acinetobacter_baumannii_BJAB0868 11 1
Acinetobacter_baumannii_BJAB07104 11 1
Acinetobacter_baumannii_TCDC-AB0715 2 1
Acinetobacter_baumannii_D1279779 10 2
Acinetobacter_baumannii_MDR-TJ 11 1
Acinetobacter_baumannii_1656-2 11 1
Acinetobacter_baumannii__ATCC_19606 11 1
Acinetobacter_baumannii_MDR-ZJ06 11 1
Acinetobacter_baumannii_ACICU 9 1
Acinetobacter_lwoffii__SH145 5 2

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Longest transcript per gene
Genome     Number   Proteins
Gorilla_gorilla_69_3.1   (Western gorilla)   1 1
Pongo_abelii_69_2   (Sumatran orangutan)   2 2
Macropus_eugenii_69_1.0   (Tammar wallaby)   1 1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1 1
Petromyzon_marinus_69_7.0   (Sea lamprey)   5 3
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   2 2

Others
Genome     Number   Proteins
Homo_sapiens__(NCBI_version)   (Human)   1 1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1 1
Ricinus_communis__(Early_assembly)   (Castor bean)   4 1
NCBI_plasmid_sequences_(Plasmids) 137 45
PDB_chains_(SCOP_1.75)_(PDB) 1 1
NCBI_viral_sequences_(Viral) 16 16
Protozoadb_2010_08_(Protozoadb) 19 19
TargetDB__(Targets) 62 22
STRING_v9.0.5_(STRING) 2353 628
Uniprot_2018_03_genome 36231 12144
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 69 55
NCBI_2017_08_genome 231903 48717
UniProt__viral_sequences_(Viral) 10 10
Protein_Data_Bank_(all_PDB_sequenc) 76 55

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