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Domain combinations for YeeU-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a YeeU-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Aeromonas_salmonicida_subsp._salmonicida_A449 1 1
Shewanella_pealeana_ATCC_700345 1 1
Shewanella_oneidensis_MR-1 1 1
Shewanella_sp._MR-4 1 1
Shewanella_putrefaciens_CN-32 1 1
Photorhabdus_asymbiotica 1 1
Photorhabdus_luminescens_subsp._laumondii_TTO1 1 1
Xenorhabdus_bovienii_SS-2004 2 2
Yersinia_pseudotuberculosis_IP_31758 1 1
Serratia_proteamaculans_568 1 1
Pectobacterium_wasabiae_WPP163 1 1
Pectobacterium_atrosepticum_SCRI1043 1 1
Pectobacterium_carotovorum_subsp._carotovorum_PC1 1 1
Erwinia_amylovora_ATCC_49946 1 1
Shigella_dysenteriae_Sd197 1 1
Shigella_boydii_CDC_3083-94 1 1
Klebsiella_oxytoca_E718 1 1
Enterobacter_aerogenes_KCTC_2190 2 2
Enterobacter_sp._R4-368 1 1
Enterobacter_sp._638 1 1
Citrobacter_rodentium_ICC168 1 1

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Strains
Genome     Number   Proteins
Shewanella_sp._ANA-3 1 1
Shewanella_sp._MR-7 1 1
Edwardsiella_tarda_FL6-60 1 1
Yersinia_pseudotuberculosis_PB1/+ 2 2
Yersinia_pseudotuberculosis_YPIII 1 1
Yersinia_pseudotuberculosis_IP_32953 1 1
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 1 1
Yersinia_enterocolitica_subsp._palearctica_Y11 1 1
Serratia_plymuthica_S13 1 1
Serratia_plymuthica_4Rx13 1 1
Dickeya_dadantii_Ech586 2 2
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 1 1
Pantoea_ananatis_LMG_5342 1 1
Erwinia_amylovora_CFBP1430 1 1
Cronobacter_sakazakii_CMCC_45402 1 1
Cronobacter_sakazakii_SP291 2 2
Shigella_flexneri_2002017 2 2
Shigella_flexneri_2a_str._2457T 1 1
Shigella_flexneri_2a_str._301 1 1
Shigella_dysenteriae_1617 2 2
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 1 1
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 1 1
Salmonella_enterica_serovar_Bovismorbificans_genomics 2 2
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 3 3
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 2 2
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 1 1
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 2 2
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 2 2
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 2 2
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 2 2
Klebsiella_oxytoca_KCTC_1686 1 1
Klebsiella_pneumoniae_342 1 1
Enterobacter_aerogenes_EA1509E 1 1
Escherichia_coli_E24377A 3 3
Escherichia_coli_E._coli_PMV-1 2 2
Escherichia_coli_JJ1886 4 4
Escherichia_coli_LY180 2 2
Escherichia_coli_O7:K1_str._CE10 1 1
Escherichia_coli_O104:H4_str._2009EL-2050 5 5
Escherichia_coli_O104:H4_str._2009EL-2071 5 5
Escherichia_coli_O104:H4_str._2011C-3493 5 5
Escherichia_coli_NA114 3 3
Escherichia_coli_P12b 3 3
Escherichia_coli_str._'clone_D_i2' 3 3
Escherichia_coli_str._'clone_D_i14' 3 3
Escherichia_coli_UM146 3 3
Escherichia_coli_042 4 4
Escherichia_coli_Xuzhou21 3 3
Escherichia_coli_IHE3034 2 2
Escherichia_coli_UMNK88 3 3
Escherichia_coli_ABU_83972 6 6
Escherichia_coli_KO11FL 2 2
Escherichia_coli_KO11FL 2 2
Escherichia_coli_ED1a 5 5
Escherichia_coli_IAI39 1 1
Escherichia_coli_UMN026 2 2
Escherichia_coli_55989 4 4
Escherichia_coli_S88 4 4
Escherichia_coli_W 2 2
Escherichia_coli_W 2 2
Escherichia_coli_DH1 4 4
Escherichia_coli_DH1 4 4
Escherichia_coli_ATCC_8739 1 1
Escherichia_coli_SMS-3-5 5 5
Escherichia_coli_SE15 2 2
Escherichia_coli_SE11 1 1
Escherichia_coli_APEC_O1 2 2
Escherichia_coli_O103:H2_str._12009 5 5
Escherichia_coli_UTI89 3 3
Escherichia_coli_536 5 5
Escherichia_coli_ETEC_H10407 4 4
Escherichia_coli_O55:H7_str._RM12579 2 2
Escherichia_coli_O55:H7_str._CB9615 3 3
Escherichia_coli_O26:H11_str._11368 4 4
Escherichia_coli_CFT073 7 7
Escherichia_coli_O111:H-_str._11128 3 3
Escherichia_coli_O127:H6_str._E2348/69 1 1
Escherichia_coli_O157:H7_str._TW14359 2 2
Escherichia_coli_O157:H7_str._EC4115 3 3
Escherichia_coli_O157:H7_str._Sakai 3 3
Escherichia_coli_O157:H7_str._EDL933 3 3
Escherichia_coli_BW2952 3 3
Escherichia_coli_str._K-12_substr._MG1655 3 3
Escherichia_coli_str._K-12_substr._W3110 4 4
Escherichia_coli_str._K-12_substr._DH10B 4 4
Escherichia_coli_B_str._REL606 1 1
Enterobacter_cloacae_SCF1 2 2
Enterobacter_cloacae_subsp._cloacae_ENHKU01 1 1
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 1 1

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Others
Genome     Number   Proteins
NCBI_plasmid_sequences_(Plasmids) 2 2
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 18 18
STRING_v9.0.5_(STRING) 113 113
Uniprot_2018_03_genome 1429 1429
NCBI_2017_08_genome 22361 22359
Protein_Data_Bank_(all_PDB_sequenc) 6 6
PDB_chains_(SCOP_1.75)_(PDB) 4 4
TargetDB__(Targets) 12 12

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