SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for Efb C-domain-like superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Efb C-domain-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Aspergillus_zonatus_v1.0 1 1
Staphylococcus_aureus_subsp._aureus_JH1 2 2
Staphylococcus_aureus 1 1

Strains
Genome     Number   Proteins
Staphylococcus_aureus_subsp._aureus_MSHR1132 2 2
Staphylococcus_aureus_CA-347 2 2
Staphylococcus_aureus_Bmb9393 2 2
Staphylococcus_aureus_M1 2 2
Staphylococcus_aureus_08BA02176 2 2
Staphylococcus_aureus_ST228/18412 1 1
Staphylococcus_aureus_ST228/18341 1 1
Staphylococcus_aureus_ST228/16125 1 1
Staphylococcus_aureus_ST228/16035 1 1
Staphylococcus_aureus_ST228/15532 1 1
Staphylococcus_aureus_ST228/10497 1 1
Staphylococcus_aureus_ST228/10388 1 1
Staphylococcus_aureus_04-02981 2 2
Staphylococcus_aureus_RF122 2 2
Staphylococcus_aureus_subsp._aureus_Z172 2 2
Staphylococcus_aureus_subsp._aureus_6850 2 2
Staphylococcus_aureus_subsp._aureus_SA957 2 2
Staphylococcus_aureus_subsp._aureus_CN1 2 2
Staphylococcus_aureus_subsp._aureus_SA40 2 2
Staphylococcus_aureus_subsp._aureus_11819-97 2 2
Staphylococcus_aureus_subsp._aureus_M013 2 2
Staphylococcus_aureus_subsp._aureus_HO_5096_0412 1 1
Staphylococcus_aureus_subsp._aureus_VC40 2 2
Staphylococcus_aureus_subsp._aureus_T0131 2 2
Staphylococcus_aureus_subsp._aureus_LGA251 2 2
Staphylococcus_aureus_subsp._aureus_ECT-R_2 2 2
Staphylococcus_aureus_subsp._aureus_JKD6159 2 2
Staphylococcus_aureus_subsp._aureus_ED133 2 2
Staphylococcus_aureus_subsp._aureus_ED98 2 2
Staphylococcus_aureus_subsp._aureus_TW20 2 2
Staphylococcus_aureus_subsp._aureus_55/2053 2 2
Staphylococcus_aureus_subsp._aureus_TCH60 2 2
Staphylococcus_aureus_subsp._aureus_str._JKD6008 2 2
Staphylococcus_aureus_subsp._aureus_71193 2 2
Staphylococcus_aureus_subsp._aureus_S0385 2 2
Staphylococcus_aureus_subsp._aureus_str._Newman 2 2
Staphylococcus_aureus_subsp._aureus_Mu3 2 2
Staphylococcus_aureus_subsp._aureus_USA300_TCH1516 2 2
Staphylococcus_aureus_subsp._aureus_USA300_FPR3757 2 2
Staphylococcus_aureus_subsp._aureus_JH9 2 2
Staphylococcus_aureus_subsp._aureus_MSSA476 2 2
Staphylococcus_aureus_subsp._aureus_MRSA252 2 2
Staphylococcus_aureus_subsp._aureus_MW2 2 2
Staphylococcus_aureus_subsp._aureus_N315 2 2
Staphylococcus_aureus_subsp._aureus_Mu50 2 2
Staphylococcus_aureus_subsp._aureus_COL 2 2
Staphylococcus_aureus_subsp._aureus_NCTC_8325 2 2

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Others
Genome     Number   Proteins
PDB_chains_(SCOP_1.75)_(PDB) 5 5
Protein_Data_Bank_(all_PDB_sequenc) 12 12
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 24 24
STRING_v9.0.5_(STRING) 30 30
Uniprot_2018_03_genome 88 88
NCBI_2017_08_genome 16169 16169
TargetDB__(Targets) 2 2

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