SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for HP0062-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a HP0062-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1 1
Citrus_clementina_v165 1 1
Leptolyngbya_sp._PCC_7376 2 2
Streptomyces_coelicolor_A3(2) 1 1
Amycolatopsis_mediterranei_U32 1 1
Mycobacterium_sp._JLS 1 1
Brachybacterium_faecium_DSM_4810 2 2
Arthrobacter_phenanthrenivorans_Sphe3 1 1
Chloroflexus_sp._MS-G 1 1
Bacillus_thuringiensis_str._Al_Hakam 1 1
Bacillus_cereus_03BB102 1 1
Bacillus_anthracis_str._A0248 1 1
Bacillus_coagulans_2-6 1 1
Capnocytophaga_canimorsus_Cc5 1 1
Phycisphaera_mikurensis_NBRC_102666 1 1
Isosphaera_pallida_ATCC_43644 2 2
Pirellula_staleyi_DSM_6068 1 1
Helicobacter_bizzozeronii_CIII-1 1 1
Helicobacter_felis_ATCC_49179 1 1
Helicobacter_pylori_B38 1 1
Delftia_acidovorans_SPH-1 1 1
Bordetella_petrii_DSM_12804 2 2
Methylomonas_methanica_MC09 1 1

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Strains
Genome     Number   Proteins
Arthrospira_platensis_NIES-39 3 3
Cyanobacterium_aponinum_PCC_10605 1 1
Amycolatopsis_mediterranei_RB 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_mediterranei_S699 1 1
Nocardia_brasiliensis_ATCC_700358 1 1
Bacillus_thuringiensis_serovar_finitimus_YBT-020 1 1
Bacillus_cereus_biovar_anthracis_str._CI 1 1
Bacillus_cereus_AH820 1 1
Bacillus_cereus_F837/76 1 1
Bacillus_cereus_E33L 1 1
Bacillus_anthracis_str._H9401 1 1
Bacillus_anthracis_str._CDC_684 1 1
Bacillus_anthracis_str._'Ames_Ancestor' 1 1
Bacillus_anthracis_str._Sterne 1 1
Bacillus_anthracis_str._Ames 1 1
Singulisphaera_acidiphila_DSM_18658 1 1
Helicobacter_pylori_BM012S 1 1
Helicobacter_pylori_BM012A 1 1
Helicobacter_pylori_SouthAfrica20 1 1
Helicobacter_pylori_UM066 1 1
Helicobacter_pylori_UM037 1 1
Helicobacter_pylori_OK310 1 1
Helicobacter_pylori_OK113 1 1
Helicobacter_pylori_Rif2 1 1
Helicobacter_pylori_Rif1 1 1
Helicobacter_pylori_HUP-B14 1 1
Helicobacter_pylori_PeCan18 1 1
Helicobacter_pylori_Shi169 1 1
Helicobacter_pylori_Shi112 1 1
Helicobacter_pylori_Shi417 1 1
Helicobacter_pylori_XZ274 2 2
Helicobacter_pylori_Aklavik86 1 1
Helicobacter_pylori_Aklavik117 1 1
Helicobacter_pylori_SNT49 1 1
Helicobacter_pylori_Puno135 1 1
Helicobacter_pylori_Puno120 1 1
Helicobacter_pylori_ELS37 1 1
Helicobacter_pylori_Gambia94/24 1 1
Helicobacter_pylori_SouthAfrica7 1 1
Helicobacter_pylori_India7 1 1
Helicobacter_pylori_Lithuania75 1 1
Helicobacter_pylori_F57 1 1
Helicobacter_pylori_F30 2 2
Helicobacter_pylori_F16 1 1
Helicobacter_pylori_Sat464 1 1
Helicobacter_pylori_Cuz20 1 1
Helicobacter_pylori_PeCan4 1 1
Helicobacter_pylori_SJM180 1 1
Helicobacter_pylori_B8 1 1
Helicobacter_pylori_52 1 1
Helicobacter_pylori_v225d 2 2
Helicobacter_pylori_83 1 1
Helicobacter_pylori_35A 1 1
Helicobacter_pylori_P12 1 1
Helicobacter_pylori_G27 1 1
Helicobacter_pylori_Shi470 1 1
Helicobacter_pylori_HPAG1 1 1
Helicobacter_pylori_F32 1 1
Helicobacter_pylori_J99 1 1
Helicobacter_pylori_26695 1 1
Helicobacter_pylori_26695 1 1

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Longest transcript per gene
Genome     Number   Proteins
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1 1

Others
Genome     Number   Proteins
TargetDB__(Targets) 1 1
PDB_chains_(SCOP_1.75)_(PDB) 1 1
STRING_v9.0.5_(STRING) 23 23
Protein_Data_Bank_(all_PDB_sequenc) 49 49
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 111 111
Uniprot_2018_03_genome 685 685
NCBI_2017_08_genome 1497 1497

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