SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for YorP-like superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a YorP-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Bacillus_subtilis_subsp._subtilis_str._168 1 1

Strains
Genome     Number   Proteins
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 1 1
Bacillus_amyloliquefaciens_Y2 1 1
Bacillus_amyloliquefaciens_XH7 1 1
Bacillus_amyloliquefaciens_LL3 1 1
Bacillus_amyloliquefaciens_TA208 1 1
Bacillus_subtilis_QB928 1 1
Bacillus_subtilis_subsp._subtilis_6051-HGW 1 1

Others
Genome     Number   Proteins
STRING_v9.0.5_(STRING) 1 1
TargetDB__(Targets) 1 1
UniProt__viral_sequences_(Viral) 1 1
NCBI_viral_sequences_(Viral) 1 1
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 3 3
Uniprot_2018_03_genome 29 29
NCBI_2017_08_genome 113 113
PDB_chains_(SCOP_1.75)_(PDB) 1 1
Protein_Data_Bank_(all_PDB_sequenc) 1 1

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