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Domain combinations for Photosystem II antenna protein-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Photosystem II antenna protein-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Selaginella_moellendorffii_ 2 2
Pinus_taeda   (Loblolly pine)   7 6
Eucalyptus_grandis_v201   (Rose gum)   3 3
Theobroma_cacao_B97-61/B2_v1   (Cacao)   6 6
Gossypium_raimondii_v221 18 18
Citrus_clementina_v165 4 4
Citrus_sinensis_v154   (Sweet orange)   1 1
Thellungiella_halophila_v173 3 2
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2 2
Capsella_rubella_v183 1 1
Arabidopsis_lyrata_   (Lyrate rockcress)   7 7
Arabidopsis_thaliana_10   (Thale cress)   2 2
Carica_papaya_   (Papaya)   6 6
Medicago_truncatula_   (Barrel medic)   13 13
Phaseolus_vulgaris_v186   (French bean)   2 2
Glycine_max_v109   (Soybean)   2 2
Cucumis_sativus_v122   (Cucumber)   1 1
Fragaria_vesca_   (Wild strawberry)   2 2
Malus_domestica_v196   (Apple)   3 3
Linum_usitatissimum_v200   (Flax)   3 3
Manihot_esculenta_v147   (Cassava)   5 5
Populus_trichocarpa_v156   (Black cottonwood)   8 8
Vitis_vinifera_   (Wine grape)   5 5
Mimulus_guttatus_v140   (Spotted monkey flower)   6 6
Solanum_lycopersicum_v.2.3   (Tomato)   15 15
Solanum_tuberosum_   (Potato)   5 4
Actinidia_chinensis_Hongyang_ 5 5
Aquilegia_coerulea_v195 1 1
Triticum_urartu_22 10 10
Triticum_aestivum_22   (Bread wheat)   111 111
Aegilops_tauschii_22 5 5
Brachypodium_distachyon_   (Stiff brome)   5 5
Oryza_barthii_22   (African wild rice)   2 2
Oryza_meridionalis_22 2 2
Oryza_glumaepatula_22 1 1
Oryza_glaberrima   (African rice)   12 12
Oryza_punctata_22 1 1
Oryza_nivara_22 1 1
Oryza_brachyantha_22   (Malo sina)   3 3
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   8 8
Oryza_sativa_v193   (Rice)   8 8
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   3 2
Setaria_italica_v164   (Foxtail millet)   3 3
Zea_mays_v181   (Maize)   3 3
Sorghum_bicolor_   (Sorghum)   9 9
Musa_acuminata_22   (Wild Malaysian banana)   1 1
Amborella_trichopoda_22 3 3
Physcomitrella_patens 1 1
Coccomyxa_subellipsoidea_sp._C-169_v2 2 2
Asterochloris_sp._Cgr/DA1pho_v1.0 2 2
Chlorella_vulgaris_ 2 2
Bathycoccus_prasinos_ 2 2
Cyanidioschyzon_merolae_strain_10D_22 2 2
Cyanidioschyzon_merolae 2 2
Porphyridium_purpureum_02_2012 1 1
Thalassiosira_pseudonana_CCMP1335 2 2
Leptolyngbya_sp._PCC_7376 6 6
Pseudanabaena_sp._PCC_7367 2 2
Acaryochloris_marina_MBIC11017 13 13
Synechocystis_sp._PCC_6803 3 3
Thermosynechococcus_sp._NK55 3 3
Thermosynechococcus_elongatus_BP-1 3 3
Synechococcus_sp._PCC_7502 2 2
Synechococcus_sp._PCC_6312 3 3
Synechococcus_sp._CC9311 3 3
Synechococcus_elongatus_PCC_7942 3 3
Prochlorococcus_marinus_str._MIT_9515 4 4
Microcoleus_sp._PCC_7113 2 2
Trichodesmium_erythraeum_IMS101 6 6
Geitlerinema_sp._PCC_7407 2 2
Cyanothece_sp._PCC_8802 2 2
Gloeocapsa_sp._PCC_7428 5 5
cyanobacterium_UCYN-A 1 1
Halothece_sp._PCC_7418 4 4
Microcystis_aeruginosa_NIES-843 2 2
Gloeobacter_violaceus_PCC_7421 2 2
Rivularia_sp._PCC_7116 5 5
Calothrix_sp._PCC_7507 8 8
Anabaena_variabilis_ATCC_29413 2 2
'Nostoc_azollae'_0708 2 2
Nostoc_sp._PCC_7107 3 3
Nostoc_punctiforme_PCC_73102 2 2
Nostoc_sp._PCC_7120 6 6
Nostoc_sp._PCC_7524 7 6
Anabaena_sp._90 2 2
Nitrobacter_winogradskyi_Nb-255 1 1

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Strains
Genome     Number   Proteins
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1 1
Hordeum_vulgare_22   (Domesticated barley)   3 3
Chroococcidiopsis_thermalis_PCC_7203 7 7
Chamaesiphon_minutus_PCC_6605 3 3
Synechocystis_sp._PCC_6803_substr._PCC-P 3 3
Synechocystis_sp._PCC_6803_substr._PCC-N 3 3
Synechocystis_sp._PCC_6803_substr._GT-I 3 3
Synechocystis_sp._PCC_6803 3 3
Cyanobium_gracile_PCC_6307 2 2
Dactylococcopsis_salina_PCC_8305 4 4
Synechococcus_sp._JA-2-3B'a(2-13) 4 4
Synechococcus_sp._JA-3-3Ab 4 4
Synechococcus_sp._CC9902 3 3
Synechococcus_sp._RCC307 2 2
Synechococcus_sp._CC9605 3 3
Synechococcus_sp._WH_8102 2 2
Synechococcus_sp._WH_7803 2 2
Synechococcus_sp._PCC_7002 3 3
Synechococcus_elongatus_PCC_6301 3 3
Prochlorococcus_marinus_str._NATL1A 9 9
Prochlorococcus_marinus_str._MIT_9301 4 4
Prochlorococcus_marinus_str._AS9601 4 4
Prochlorococcus_marinus_subsp._marinus_str._CCMP1375 10 10
Prochlorococcus_marinus_subsp._pastoris_str._CCMP1986 3 3
Prochlorococcus_marinus_str._MIT_9215 4 4
Prochlorococcus_marinus_str._MIT_9211 9 9
Prochlorococcus_marinus_str._MIT_9313 4 4
Prochlorococcus_marinus_str._MIT_9312 4 4
Prochlorococcus_marinus_str._MIT_9303 4 4
Prochlorococcus_marinus_str._NATL2A 9 9
Crinalium_epipsammum_PCC_9333 2 2
Oscillatoria_nigro-viridis_PCC_7112 2 2
Oscillatoria_acuminata_PCC_6304 3 3
Arthrospira_platensis_NIES-39 3 3
Cyanothece_sp._PCC_7822 2 2
Cyanothece_sp._PCC_7425 3 3
Cyanothece_sp._PCC_7424 3 3
Cyanothece_sp._ATCC_51142 3 3
Cyanothece_sp._PCC_8801 2 2
Cyanobacterium_aponinum_PCC_10605 3 3
Cyanobacterium_stanieri_PCC_7202 3 3
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 2 2
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 8 8
Stanieria_cyanosphaera_PCC_7437 3 3
Calothrix_parietina_Calothrix_sp._PCC_6303 5 5
Cylindrospermum_stagnale_PCC_7417 2 2
Anabaena_cylindrica_PCC_7122 6 6

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Longest transcript per gene
Genome     Number   Proteins
Arabidopsis_thaliana_10   (Thale cress)   2 2

Others
Genome     Number   Proteins
Lotus_japonicus__(Early_assembly) 18 18
Malus_x_domestica_(Duplicate)   (Apple)   3 3
Ricinus_communis__(Early_assembly)   (Castor bean)   8 8
Nicotiana_benthamiana_0.4.4_(Early_draft) 19 19
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   15 15
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   15 15
Guillardia_theta_(nucleomorph) 2 2
NCBI_plasmid_sequences_(Plasmids) 1 1
STRING_v9.0.5_(STRING) 219 217
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 329 327
NCBI_2017_08_genome 1484 1482
Uniprot_2018_03_genome 13564 13497
PDB_chains_(SCOP_1.75)_(PDB) 6 4
Protein_Data_Bank_(all_PDB_sequenc) 178 174

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