SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for Formylmethanofuran:tetrahydromethanopterin formyltransferase superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Formylmethanofuran:tetrahydromethanopterin formyltransferase domain in that genome.

Complete genomes
Genome     Number   Proteins
Halanaerobium_hydrogeniformans 2 1
Isosphaera_pallida_ATCC_43644 2 1
Planctomyces_brasiliensis_DSM_5305 2 1
Planctomyces_limnophilus_DSM_3776 2 1
Rhodopirellula_baltica_SH_1 2 1
Pirellula_staleyi_DSM_6068 2 1
Anaerobaculum_mobile_DSM_13181 2 1
Candidatus_Methylomirabilis_oxyfera 2 1
Azoarcus_sp._KH32C 2 1
Methylibium_petroleiphilum_PM1 2 1
Rubrivivax_gelatinosus_IL144 2 1
Leptothrix_cholodnii_SP-6 2 1
Burkholderia_phymatum_STM815 4 2
Burkholderia_xenovorans_LB400 2 1
Burkholderia_sp._RPE64 2 1
Burkholderia_sp._CCGE1002 2 1
Variovorax_paradoxus_S110 2 1
Methylotenera_versatilis_301 2 1
Methylotenera_mobilis_JLW8 2 1
Methylovorus_sp._MP688 2 1
Methylovorus_glucosetrophus_SIP3-4 2 1
Methylobacillus_flagellatus_KT 2 1
Azospirillum_lipoferum_4B 4 2
Azospirillum_brasilense_Sp245 2 1
Granulibacter_bethesdensis_CGDNIH1 2 1
Starkeya_novella_DSM_506 2 1
Xanthobacter_autotrophicus_Py2 2 1
Methylobacterium_chloromethanicum_CM4 2 1
Methylobacterium_extorquens_AM1 2 1
Methylobacterium_sp._4-46 2 1
Methylobacterium_populi_BJ001 2 1
Methylobacterium_nodulans_ORS_2060 2 1
Methylobacterium_radiotolerans_JCM_2831 2 1
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 2 1
Methylocella_silvestris_BL2 2 1
Hyphomicrobium_sp._MC1 2 1
Hyphomicrobium_denitrificans_ATCC_51888 2 1
Methylocystis_sp._SC2 2 1
Methylomicrobium_alcaliphilum 2 1
Methylomonas_methanica_MC09 2 1
Methylococcus_capsulatus_str._Bath 2 1
Nitrosococcus_watsonii_C-113 2 1
Nitrosococcus_halophilus_Nc4 2 1
Nitrosococcus_oceani_ATCC_19707 2 1
Methylophaga_sp._JAM1 2 1
Methanocella_arvoryzae_MRE50 2 1
Methanocella_conradii_HZ254 2 1
Methanocella_paludicola_SANAE 2 1
Methanosaeta_harundinacea_6Ac 2 1
Methanosaeta_thermophila_PT 2 1
Methanosaeta_concilii_GP6 2 1
Methanosalsum_zhilinae_DSM_4017 2 1
Methanohalobium_evestigatum_Z-7303 2 1
Methanococcoides_burtonii_DSM_6242 2 1
Methanosarcina_acetivorans_C2A 2 1
Methanosarcina_mazei_Go1 2 1
Methanosarcina_barkeri_str._Fusaro 2 1
Methanohalophilus_mahii_DSM_5219 2 1
Methanosphaerula_palustris_E1-9c 2 1
Methanoregula_boonei_6A8 4 2
Methanospirillum_hungatei_JF-1 2 1
Methanocorpusculum_labreanum_Z 2 1
Methanoplanus_petrolearius_DSM_11571 4 2
Methanoculleus_bourgensis_MS2 2 1
Methanoculleus_marisnigri_JR1 2 1
Methanopyrus_kandleri_AV19 4 2
Ferroglobus_placidus_DSM_10642 4 2
Archaeoglobus_profundus_DSM_5631 2 1
Archaeoglobus_veneficus_SNP6 4 2
Archaeoglobus_fulgidus_DSM_4304 4 2
Methanotorris_igneus_Kol_5 2 1
Methanocaldococcus_sp._FS406-22 2 1
Methanocaldococcus_fervens_AG86 2 1
Methanocaldococcus_vulcanius_M7 2 1
methanocaldococcus_infernus_ME 2 1
Methanocaldococcus_jannaschii_DSM_2661 2 1
Methanothermococcus_okinawensis_IH1 2 1
Methanococcus_aeolicus_Nankai-3 2 1
Methanococcus_maripaludis_C5 2 1
Methanococcus_voltae_A3 2 1
Methanococcus_vannielii_SB 2 1
Methanothermus_fervidus_DSM_2088 4 2
Methanothermobacter_marburgensis_str._Marburg 4 2
Methanothermobacter_thermautotrophicus_str._Delta_H 4 2
Methanosphaera_stadtmanae_DSM_3091 4 2
Methanobrevibacter_sp._AbM4 4 2
Methanobrevibacter_ruminantium_M1 4 2
Methanobrevibacter_smithii_ATCC_35061 4 2
Complete_genome_sequence_of_Methanobacterium_sp._Mb1 4 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Singulisphaera_acidiphila_DSM_18658 2 1
Burkholderia_phenoliruptrix_BR3459a 2 1
Burkholderia_sp._YI23 2 1
Burkholderia_sp._CCGE1003 2 1
Burkholderia_sp._CCGE1001 2 1
Variovorax_paradoxus_B4 2 1
Methylobacterium_extorquens_DM4 2 1
Methylobacterium_extorquens_PA1 2 1
Hyphomicrobium_nitrativorans_NL23 2 1
Hyphomicrobium_denitrificans_1NES1 2 1
Methylophaga_sp._JAM7 2 1
Methanomethylovorans_hollandica_DSM_15978 2 1
Methanolobus_psychrophilus_R15 2 1
Methanosarcina_mazei_Tuc01 2 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 4 2
Archaeoglobus_sulfaticallidus_PM70-1 4 2
Methanococcus_maripaludis_X1 2 1
Methanococcus_maripaludis_C6 2 1
Methanococcus_maripaludis_C7 2 1
Methanococcus_maripaludis_S2 2 1
Methanobacterium_sp._SWAN-1 4 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
NCBI_plasmid_sequences_(Plasmids) 12 6
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 144 144
NCBI_2017_08_genome 1716 858
PDB_chains_(SCOP_1.75)_(PDB) 6 3
Uniprot_2018_03_genome 2079 1061
Protein_Data_Bank_(all_PDB_sequenc) 48 24
STRING_v9.0.5_(STRING) 110 55

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]