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Domain combinations for Origin of replication-binding domain, RBD-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Origin of replication-binding domain, RBD-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Sarcoptes_scabiei 1 1
Serpula_lacrymans_var._lacrymans_S7.9_ 2 2
Pisolithus_tinctorius_Marx_270_v1.0 1 1
Laccaria_bicolor_S238N-H82_ 1 1
Aspergillus_brasiliensis_v1.0 1 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1 1
Entamoeba_invadens_1.2 3 3
Malus_domestica_v196   (Apple)   2 2
Perkinsus_marinus_ATCC_50983_ 2 2
Acaryochloris_marina_MBIC11017 9 9
Nostoc_punctiforme_PCC_73102 2 2
Nostoc_sp._PCC_7120 1 1
Aster_yellows_witches'-broom_phytoplasma_AYWB 5 5
Conexibacter_woesei_DSM_14684 1 1
Acidimicrobium_ferrooxidans_DSM_10331 1 1
Nakamurella_multipartita_DSM_44233 1 1
Modestobacter_marinus 5 5
Blastococcus_saxobsidens_DD2 12 12
Geodermatophilus_obscurus_DSM_43160 5 5
Catenulispora_acidiphila_DSM_44928 1 1
Stackebrandtia_nassauensis_DSM_44728 2 2
Frankia_sp._EAN1pec 1 1
Frankia_alni_ACN14a 1 1
Streptomyces_sp._PAMC26508 2 2
Streptomyces_avermitilis_MA-4680 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 6 6
Pseudonocardia_dioxanivorans_CB1190 2 2
Kribbella_flavida_DSM_17836 2 1
Nocardioides_sp._JS614 6 6
Microlunatus_phosphovorus_NM-1 1 1
Tsukamurella_paurometabola_DSM_20162 2 2
Gordonia_sp._KTR9 1 1
Gordonia_bronchialis_DSM_43247 1 1
Rhodococcus_erythropolis_PR4 1 1
Nocardia_cyriacigeorgica_GUH-2 1 1
Amycolicicoccus_subflavus_DQS3-9A1 3 3
Mycobacterium_abscessus_ATCC_19977 1 1
Mycobacterium_vanbaalenii_PYR-1 2 2
Mycobacterium_gilvum_PYR-GCK 3 3
Mycobacterium_chubuense_NBB4 5 5
Mycobacterium_marinum_M 2 2
Corynebacterium_resistens_DSM_45100 1 1
Corynebacterium_aurimucosum_ATCC_700975 1 1
Corynebacterium_efficiens_YS-314 2 2
Corynebacterium_variabile_DSM_44702 1 1
Kytococcus_sedentarius_DSM_20547 2 2
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 2 2
Intrasporangium_calvum_DSM_43043 1 1
Xylanimonas_cellulosilytica_DSM_15894 2 2
Cellulomonas_fimi_ATCC_484 1 1
[Cellvibrio]_gilvus_ATCC_13127 1 1
Arthrobacter_phenanthrenivorans_Sphe3 1 1
Arthrobacter_aurescens_TC1 4 4
Arthrobacter_arilaitensis_Re117 1 1
Arthrobacter_sp._Rue61a 2 2
Micrococcus_luteus_NCTC_2665 1 1
Bifidobacterium_dentium_Bd1 1 1
Veillonella_parvula_DSM_2008 1 1
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 1 1
Sulfobacillus_acidophilus_DSM_10332 1 1
Niastella_koreensis_GR20-10 2 2
Chitinophaga_pinensis_DSM_2588 1 1
Spirosoma_linguale_DSM_74 1 1
Planctomyces_brasiliensis_DSM_5305 1 1
Opitutus_terrae_PB90-1 3 3
Granulicella_tundricola_MP5ACTX9 4 4
Granulicella_mallensis_MP5ACTX8 1 1
Terriglobus_saanensis_SP1PR4 3 3
Terriglobus_roseus_DSM_18391 1 1
Acidobacterium_capsulatum_ATCC_51196 4 4
Thermodesulfovibrio_yellowstonii_DSM_11347 1 1
Leptospirillum_ferrooxidans_C2-3 1 1
Acidithiobacillus_ferrivorans_SS3 1 1
Acidithiobacillus_caldus_SM-1 1 1
Sulfurospirillum_barnesii_SES-3 1 1
Sulfurimonas_denitrificans_DSM_1251 1 1
Nitratiruptor_sp._SB155-2 1 1
Desulfobulbus_propionicus_DSM_2032 1 1
Geobacter_sp._M21 1 1
Anaeromyxobacter_dehalogenans_2CP-1 1 1
beta_proteobacterium_CB 1 1
Thiomonas_arsenitoxydans 1 1
Thiomonas_intermedia_K12 1 1
Burkholderia_rhizoxinica_HKI_454 1 1
Burkholderia_phytofirmans_PsJN 1 1
Burkholderia_cenocepacia_HI2424 1 1
Burkholderia_multivorans_ATCC_17616 1 1
Burkholderia_vietnamiensis_G4 2 2
Burkholderia_gladioli_BSR3 2 2
Burkholderia_glumae_BGR1 3 3
Alicycliphilus_denitrificans_K601 1 1
Delftia_sp._Cs1-4 1 1
Acidovorax_ebreus_TPSY 1 1
Acidovorax_sp._JS42 1 1
Pusillimonas_sp._T7-7 2 2
Bordetella_petrii_DSM_12804 1 1
Thiobacillus_denitrificans_ATCC_25259 2 2
Methylovorus_glucosetrophus_SIP3-4 1 1
Parvularcula_bermudensis_HTCC2503 1 1
Asticcacaulis_excentricus_CB_48 1 1
Caulobacter_crescentus_NA1000 1 1
Erythrobacter_litoralis_HTCC2594 3 3
Sphingopyxis_alaskensis_RB2256 1 1
Novosphingobium_sp._PP1Y 3 3
Novosphingobium_aromaticivorans_DSM_12444 2 2
Sphingobium_japonicum_UT26S 1 1
Sphingobium_chlorophenolicum_L-1 1 1
Sphingomonas_sp._MM-1 1 1
Sphingomonas_wittichii_RW1 2 2
Azospirillum_lipoferum_4B 1 1
Gluconacetobacter_xylinus_NBRC_3288 2 2
Granulibacter_bethesdensis_CGDNIH1 1 1
Gluconacetobacter_diazotrophicus_PAl_5 1 1
Acidiphilium_multivorum_AIU301 3 3
Acidiphilium_cryptum_JF-5 5 5
Gluconobacter_oxydans_621H 1 1
Acetobacter_pasteurianus_IFO_3283-01 2 2
Candidatus_Puniceispirillum_marinum_IMCC1322 1 1
Methylobacterium_extorquens_AM1 1 1
Methylobacterium_radiotolerans_JCM_2831 1 1
Beijerinckia_indica_subsp._indica_ATCC_9039 1 1
Aeromonas_salmonicida_subsp._salmonicida_A449 2 2
Aliivibrio_salmonicida_LFI1238 1 1
Photobacterium_profundum_SS9 1 1
Shewanella_oneidensis_MR-1 4 4
Shewanella_baltica_OS185 3 3
Shewanella_putrefaciens_CN-32 1 1
Methylomonas_methanica_MC09 1 1
Stenotrophomonas_maltophilia_K279a 1 1
Xanthomonas_axonopodis_pv._citri_str._306 1 1
Xanthomonas_albilineans_GPE_PC73 2 2
Halothiobacillus_neapolitanus_c2 1 1
Legionella_longbeachae_NSW150 2 2
Yersinia_pestis_Pestoides_F 1 1
Pantoea_sp._At-9b 2 2
Erwinia_tasmaniensis_Et1/99 1 1
Erwinia_billingiae_Eb661 1 1
Shigella_sonnei_Ss046 1 1
Shigella_dysenteriae_Sd197 2 2
Klebsiella_oxytoca_E718 1 1
Enterobacter_sp._R4-368 1 1
Enterobacter_sp._638 1 1
Enterobacter_asburiae_LF7a 1 1

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Strains
Genome     Number   Proteins
Aspergillus_fumigatus_A1163_ 1 1
Chamaesiphon_minutus_PCC_6605 2 2
Synechococcus_sp._PCC_7002 1 1
Cyanothece_sp._PCC_7822 2 2
Cyanothece_sp._PCC_7425 1 1
Cyanothece_sp._PCC_7424 1 1
Cyanothece_sp._ATCC_51142 2 2
Frankia_sp._EuI1c 1 1
Frankia_sp._CcI3 1 1
Streptomyces_davawensis_JCM_4913 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 5 5
Saccharothrix_espanaensis_DSM_44229 1 1
Propionibacterium_acnes_KPA171202 3 3
Nocardia_brasiliensis_ATCC_700358 1 1
Mycobacterium_abscessus_subsp._bolletii_50594 2 2
Mycobacterium_liflandii_128FXT 1 1
Mycobacterium_sp._KMS 2 2
Mycobacterium_sp._MCS 1 1
Mycobacterium_yongonense_05-1390 1 1
Mycobacterium_gilvum_Spyr1 2 2
Mycobacterium_kansasii_ATCC_12478 1 1
Corynebacterium_maris_DSM_45190 1 1
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 1 1
Corynebacterium_callunae_DSM_20147 2 2
Corynebacterium_diphtheriae_CDCE_8392 1 1
Leifsonia_xyli_subsp._cynodontis_DSM_46306 1 1
Bifidobacterium_longum_subsp._longum_F8 1 1
Bifidobacterium_thermophilum_RBL67 1 1
Sulfobacillus_acidophilus_TPY 1 1
Rhodothermus_marinus_SG0.5JP17-172 2 2
Singulisphaera_acidiphila_DSM_18658 1 1
Leptospirillum_ferriphilum_ML-04 4 4
Ralstonia_solanacearum_CMR15 1 1
Burkholderia_sp._YI23 2 2
Burkholderia_pseudomallei_MSHR305 1 1
Burkholderia_cenocepacia_J2315 1 1
Burkholderia_multivorans_ATCC_17616 1 1
Leisingera_methylohalidivorans_DSM_14336 1 1
Rhodobacter_sphaeroides_2.4.1 1 1
Gluconacetobacter_diazotrophicus_PAl_5 1 1
Gluconobacter_oxydans_H24 3 3
Acetobacter_pasteurianus_386B 1 1
Acetobacter_pasteurianus_IFO_3283-12 2 2
Acetobacter_pasteurianus_IFO_3283-01-42C 2 2
Acetobacter_pasteurianus_IFO_3283-32 2 2
Acetobacter_pasteurianus_IFO_3283-26 2 2
Acetobacter_pasteurianus_IFO_3283-22 2 2
Acetobacter_pasteurianus_IFO_3283-07 2 2
Acetobacter_pasteurianus_IFO_3283-03 2 2
Methylobacterium_extorquens_DM4 1 1
Rhodopseudomonas_palustris_BisB18 1 1
Bradyrhizobium_sp._BTAi1 1 1
Bradyrhizobium_oligotrophicum_S58 1 1
Bradyrhizobium_japonicum_USDA_6 1 1
Vibrio_vulnificus_CMCP6 1 1
Vibrio_vulnificus_YJ016 1 1
Shewanella_sp._W3-18-1 2 2
Shewanella_baltica_BA175 1 1
Shewanella_baltica_OS678 5 5
Shewanella_baltica_OS223 4 4
Shewanella_baltica_OS195 6 6
Shewanella_sp._MR-7 1 1
Shewanella_putrefaciens_200 1 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1 1
Xanthomonas_axonopodis_Xac29-1 1 1
Legionella_pneumophila_str._Paris 1 1
Legionella_pneumophila_str._Lens 1 1
Legionella_pneumophila_subsp._pneumophila_LPE509 1 1
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 1 1
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 1 1
Legionella_pneumophila_subsp._pneumophila 1 1
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 1 1
Rahnella_aquatilis_HX2 1 1
Serratia_plymuthica_4Rx13 1 1
Shigella_sonnei_53G 1 1
Shigella_flexneri_2002017 2 2
Shigella_flexneri_2a_str._301 2 2
Shigella_dysenteriae_1617 2 2
Shigella_boydii_Sb227 2 2
Salmonella_bongori_N268-08 1 1
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 1 1
Salmonella_enterica_serovar_Bovismorbificans_genomics 1 1
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 1 1
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 2 2
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 1 1
Escherichia_coli_O104:H4_str._2009EL-2050 1 1
Escherichia_coli_O104:H4_str._2009EL-2071 1 1
Escherichia_coli_O104:H4_str._2011C-3493 1 1
Escherichia_coli_NA114 1 1
Escherichia_coli_UM146 1 1
Escherichia_coli_042 1 1
Escherichia_coli_UMNK88 1 1
Escherichia_coli_O83:H1_str._NRG_857C 1 1
Escherichia_coli_UMN026 1 1
Escherichia_coli_S88 1 1
Escherichia_coli_SMS-3-5 1 1
Escherichia_coli_SE15 1 1
Escherichia_coli_SE11 1 1
Escherichia_coli_APEC_O1 1 1
Escherichia_coli_O103:H2_str._12009 1 1
Escherichia_coli_UTI89 1 1
Escherichia_coli_ETEC_H10407 1 1
Escherichia_coli_O26:H11_str._11368 1 1
Escherichia_coli_O111:H-_str._11128 1 1
Escherichia_coli_O127:H6_str._E2348/69 1 1
Enterobacter_cloacae_subsp._cloacae_NCTC_9394 1 1
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 2 2
Pseudomonas_stutzeri_DSM_4166 1 1
Pseudomonas_putida_HB3267 1 1
Acinetobacter_baumannii_BJAB0868 1 1
Acinetobacter_baumannii_BJAB07104 1 1
Acinetobacter_baumannii_TCDC-AB0715 1 1
Acinetobacter_baumannii_MDR-TJ 1 1
Acinetobacter_baumannii_1656-2 1 1
Acinetobacter_baumannii_ACICU 1 1
Acinetobacter_johnsonii__SH046 1 1

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Others
Genome     Number   Proteins
Malus_x_domestica_(Duplicate)   (Apple)   2 2
NCBI_plasmid_sequences_(Plasmids) 420 420
PDB_chains_(SCOP_1.75)_(PDB) 10 10
Protein_Data_Bank_(all_PDB_sequenc) 114 114
TargetDB__(Targets) 4 4
STRING_v9.0.5_(STRING) 182 182
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 244 244
NCBI_viral_sequences_(Viral) 599 599
UniProt__viral_sequences_(Viral) 3689 3689
Uniprot_2018_03_genome 15330 15321
NCBI_2017_08_genome 16956 16944

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