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Domain combinations for Phage fibre proteins superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Phage fibre proteins domain in that genome.

Complete genomes
Genome     Number   Proteins
Rattus_norvegicus_76_5.0   (Norway rat)   2 2
Mus_musculus_76_38   (House mouse)   7 6
Ochotona_princeps_76   (American pika)   1 1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1 1
Saccoglossus_kowalevskii_v3.0 39 24
Petromyzon_marinus_76_7.0   (Sea lamprey)   11 4
Anas_platyrhynchos_76_1.0   (Mallard)   1 1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   3 1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   3 2
Octopus_bimaculoides_280 5 5
Lottia_gigantea_   (Owl limpet)   15 13
Capitella_sp._I_ 4 3
Lucilia_cuprina   (Australian sheep blowfly)   3 3
Drosophila_virilis_1.2 1 1
Megaselia_scalaris_22 1 1
Tribolium_castaneum_3.0   (Red flour beetle)   1 1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   2 1
Acyrthosiphon_pisum_   (Pea aphid)   1 1
Strigamia_maritima_22 1 1
Onchocerca_volvulus_22 1 1
Caenorhabditis_japonica_ 1 1
Caenorhabditis_briggsae_2 116 83
Mnemiopsis_leidyi   (Sea walnut)   2 2
Acropora_digitifera_v1.0 2 2
Nematostella_vectensis_1.0   (Starlet sea anemone)   34 28
Hydra_vulgaris 2 2
Sphaeroforma_arctica_JP610_ 4 4
Sphaerobolus_stellatus_v1.0 1 1
Piloderma_croceum_F_1598_v1.0 1 1
Daldinia_eschscholzii_EC12_v1.0 2 2
Pyrenophora_tritici-repentis_ 1 1
Aspergillus_nidulans_FGSC_A4_ 1 1
Aspergillus_terreus_NIH2624_ 1 1
Arabidopsis_thaliana_10   (Thale cress)   1 1
Medicago_truncatula_   (Barrel medic)   3 2
Fragaria_vesca_   (Wild strawberry)   1 1
Malus_domestica_v196   (Apple)   1 1
Solanum_lycopersicum_v.2.3   (Tomato)   1 1
Aquilegia_coerulea_v195 1 1
Triticum_aestivum_22   (Bread wheat)   1 1
Aegilops_tauschii_22 1 1
Oryza_meridionalis_22 1 1
Oryza_nivara_22 1 1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   1 1
Oryza_sativa_v193   (Rice)   1 1
Physcomitrella_patens 2 2
Volvox_carteri_f._nagariensis_ 1 1
Volvox_carteri_v199 3 1
Thecamonas_trahens_ATCC_50062_ 1 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   7 4
Phytophthora_capsici_ 1 1
Fragilariopsis_cylindrus 8 5
Perkinsus_marinus_ATCC_50983_ 3 1
Neospora_caninum 1 1
Toxoplasma_gondii_ME49 1 1
Plasmodium_falciparum_3D7_ 15 13
Plasmodium_vivax_SaI-1_7.0 1 1
Plasmodium_knowlesi_strain_H_ 4 2
Plasmodium_berghei_ANKA_ 3 2
Trichomonas_vaginalis_ 42 40
Guillardia_theta_CCMP2712_v1.0_ 2 2
Emiliania_huxleyi_CCMP1516_ 1 1
Leptolyngbya_sp._PCC_7376 1 1
Synechococcus_sp._CC9311 1 1
Rivularia_sp._PCC_7116 1 1
Calothrix_sp._PCC_7507 1 1
Nostoc_sp._PCC_7107 1 1
Nostoc_punctiforme_PCC_73102 1 1
Nostoc_sp._PCC_7524 1 1
Ureaplasma_urealyticum_serovar_10_str._ATCC_33699 2 1
Frankia_sp._EAN1pec 1 1
Kitasatospora_setae_KM-6054 1 1
Streptomyces_coelicolor_A3(2) 1 1
Streptomyces_flavogriseus_ATCC_33331 1 1
Microlunatus_phosphovorus_NM-1 2 2
Actinoplanes_sp._SE50/110 1 1
Mycobacterium_sp._JLS 1 1
Xylanimonas_cellulosilytica_DSM_15894 2 2
Herpetosiphon_aurantiacus_DSM_785 1 1
Roseiflexus_sp._RS-1 1 1
Roseiflexus_castenholzii_DSM_13941 1 1
Anaerococcus_prevotii_DSM_20548 1 1
Megasphaera_elsdenii_DSM_20460 2 1
Acidaminococcus_fermentans_DSM_20731 2 1
Clostridium_cellulolyticum_H10 1 1
Ethanoligenens_harbinense_YUAN-3 2 2
Faecalibacterium_prausnitzii 1 1
Oscillibacter_valericigenes_Sjm18-20 1 1
butyrate-producing_bacterium_SS3/4 1 1
Clostridium_sp._BNL1100 1 1
Clostridium_acetobutylicum_ATCC_824 1 1
Lactococcus_lactis_subsp._cremoris_MG1363 1 1
Streptococcus_equi_subsp._equi_4047 4 4
Streptococcus_dysgalactiae_subsp._equisimilis_GGS_124 1 1
Streptococcus_pyogenes_str._Manfredo 4 4
Brevibacillus_brevis_NBRC_100599 1 1
Gemmatimonas_aurantiaca_T-27 2 2
Niastella_koreensis_GR20-10 1 1
Chitinophaga_pinensis_DSM_2588 4 4
Candidatus_Cardinium_hertigii 1 1
Fibrella_aestuarina 1 1
Cytophaga_hutchinsonii_ATCC_33406 1 1
Runella_slithyformis_DSM_19594 1 1
Prevotella_intermedia_17 4 4
Alistipes_finegoldii_DSM_17242 4 4
Bacteroides_salanitronis_DSM_18170 1 1
Bacteroides_fragilis_YCH46 2 2
Solitalea_canadensis_DSM_3403 1 1
Sphingobacterium_sp._21 1 1
Owenweeksia_hongkongensis_DSM_17368 1 1
Lacinutrix_sp._5H-3-7-4 2 2
Zobellia_galactanivorans 2 2
Cellulophaga_algicola_DSM_14237 2 2
Ornithobacterium_rhinotracheale_DSM_15997 1 1
Flavobacterium_branchiophilum_FL-15 3 3
Flavobacterium_columnare_ATCC_49512 6 6
Flavobacterium_johnsoniae_UW101 5 5
Planctomyces_brasiliensis_DSM_5305 1 1
Rhodopirellula_baltica_SH_1 1 1
Pirellula_staleyi_DSM_6068 1 1
Treponema_succinifaciens_DSM_2489 2 2
Candidatus_Solibacter_usitatus_Ellin6076 1 1
Granulicella_tundricola_MP5ACTX9 1 1
Granulicella_mallensis_MP5ACTX8 7 6
Terriglobus_saanensis_SP1PR4 1 1
Candidatus_Nitrospira_defluvii 2 1
Arcobacter_sp._L 2 2
Arcobacter_nitrofigilis_DSM_7299 2 2
Campylobacter_concisus_13826 1 1
Helicobacter_hepaticus_ATCC_51449 3 3
Helicobacter_cinaedi_PAGU611 2 2
Nitratiruptor_sp._SB155-2 1 1
Desulfobulbus_propionicus_DSM_2032 1 1
Desulfovibrio_aespoeensis_Aspo-2 1 1
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 2 2
Desulfovibrio_salexigens_DSM_2638 1 1
Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 1 1
Desulfovibrio_africanus_str._Walvis_Bay 1 1
Geobacter_sp._M21 1 1
Geobacter_bemidjiensis_Bem 1 1
Geobacter_sulfurreducens_KN400 2 2
Geobacter_metallireducens_GS-15 2 2
Pelobacter_carbinolicus_DSM_2380 2 2
Haliangium_ochraceum_DSM_14365 3 3
Sorangium_cellulosum_'So_ce_56' 32 25
Corallococcus_coralloides_DSM_2259 3 3
Myxococcus_xanthus_DK_1622 5 3
Myxococcus_fulvus_HW-1 5 3
Dechloromonas_aromatica_RCB 2 1
Azoarcus_sp._KH32C 1 1
Azoarcus_sp._BH72 3 3
Dechlorosoma_suillum_PS 1 1
Pseudogulbenkiania_sp._NH8B 3 3
Chromobacterium_violaceum_ATCC_12472 11 6
Rubrivivax_gelatinosus_IL144 1 1
Leptothrix_cholodnii_SP-6 2 1
Burkholderia_phytofirmans_PsJN 4 4
Burkholderia_phymatum_STM815 8 8
Burkholderia_xenovorans_LB400 4 4
Ralstonia_eutropha_JMP134 1 1
Cupriavidus_taiwanensis_LMG_19424 1 1
Ralstonia_eutropha_H16 7 7
Ralstonia_pickettii_12D 3 3
Ralstonia_solanacearum_CFBP2957 3 3
Burkholderia_sp._RPE64 1 1
Burkholderia_sp._CCGE1002 3 3
Burkholderia_thailandensis_E264 9 8
Burkholderia_pseudomallei_1106a 10 8
Burkholderia_mallei_SAVP1 7 6
Burkholderia_ambifaria_AMMD 5 5
Burkholderia_cenocepacia_HI2424 6 6
Burkholderia_multivorans_ATCC_17616 3 3
Burkholderia_vietnamiensis_G4 2 2
Burkholderia_gladioli_BSR3 8 8
Burkholderia_glumae_BGR1 5 5
Delftia_sp._Cs1-4 6 3
Delftia_acidovorans_SPH-1 8 4
Variovorax_paradoxus_S110 10 9
Acidovorax_citrulli_AAC00-1 20 13
Acidovorax_avenae_subsp._avenae_ATCC_19860 12 8
Collimonas_fungivorans_Ter331 7 6
Herbaspirillum_seropedicae_SmR1 5 5
Pusillimonas_sp._T7-7 2 1
Advenella_kashmirensis_WT001 5 5
Taylorella_asinigenitalis_MCE3 5 5
Taylorella_equigenitalis_MCE9 6 5
Bordetella_petrii_DSM_12804 3 2
Bordetella_avium_197N 1 1
Bordetella_bronchiseptica_RB50 2 1
Achromobacter_xylosoxidans_A8 1 1
Achromobacter_xylosoxidans 1 1
Nitrosomonas_sp._Is79A3 1 1
Methylovorus_sp._MP688 2 2
Methylovorus_glucosetrophus_SIP3-4 2 2
Erythrobacter_litoralis_HTCC2594 1 1
Novosphingobium_aromaticivorans_DSM_12444 1 1
Dinoroseobacter_shibae_DFL_12 2 2
Pseudovibrio_sp._FO-BEG1 4 3
Jannaschia_sp._CCS1 1 1
Rhodobacter_sphaeroides_ATCC_17029 2 1
Paracoccus_denitrificans_PD1222 2 1
Tistrella_mobilis_KA081020-065 2 2
Magnetospirillum_magneticum_AMB-1 1 1
Azospirillum_lipoferum_4B 2 2
Azospirillum_sp._B510 3 3
Azospirillum_brasilense_Sp245 1 1
Acidiphilium_multivorum_AIU301 1 1
Acidiphilium_cryptum_JF-5 1 1
Azorhizobium_caulinodans_ORS_571 1 1
Methylobacterium_nodulans_ORS_2060 1 1
Methylobacterium_radiotolerans_JCM_2831 2 1
Rhizobium_etli_CIAT_652 3 2
Rhizobium_leguminosarum_bv._viciae_3841 1 1
Agrobacterium_tumefaciens_str._C58 3 2
Agrobacterium_sp._H13-3 1 1
Agrobacterium_vitis_S4 8 6
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 2 1
Mesorhizobium_loti_MAFF303099 2 1
Methylocella_silvestris_BL2 1 1
Bradyrhizobium_japonicum_USDA_110 1 1
Bartonella_grahamii_as4aup 2 2
Saccharophagus_degradans_2-40 1 1
Teredinibacter_turnerae_T7901 2 2
Cellvibrio_japonicus_Ueda107 1 1
Aggregatibacter_aphrophilus_NJ8700 3 3
Aggregatibacter_actinomycetemcomitans_D7S-1 7 7
Gallibacterium_anatis_UMN179 1 1
Oceanimonas_sp._GK1 1 1
Tolumonas_auensis_DSM_9187 3 3
Aeromonas_salmonicida_subsp._salmonicida_A449 1 1
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 3 3
Aliivibrio_salmonicida_LFI1238 3 3
Vibrio_fischeri_MJ11 4 4
Vibrio_sp._Ex25 2 2
Vibrio_harveyi_ATCC_BAA-1116 3 3
Vibrio_parahaemolyticus_RIMD_2210633 2 2
Vibrio_splendidus_LGP32 2 2
Vibrio_anguillarum_775 4 4
Vibrio_furnissii_NCTC_11218 5 5
Vibrio_vulnificus_MO6-24/O 1 1
Vibrio_cholerae_O395 3 3
Photobacterium_profundum_SS9 1 1
Psychromonas_sp._CNPT3 1 1
Shewanella_denitrificans_OS217 1 1
Shewanella_woodyi_ATCC_51908 1 1
Shewanella_frigidimarina_NCIMB_400 1 1
Pseudoalteromonas_sp._SM9913 1 1
Pseudoalteromonas_atlantica_T6c 1 1
Marinobacter_adhaerens_HP15 2 2
Marinobacter_sp._BSs20148 1 1
Marinobacter_hydrocarbonoclasticus_ATCC_49840 3 3
Marinobacter_aquaeolei_VT8 5 5
Hahella_chejuensis_KCTC_2396 6 6
Marinomonas_posidonica_IVIA-Po-181 4 4
Marinomonas_sp._MWYL1 5 5
Marinomonas_mediterranea_MMB-1 2 2
Chromohalobacter_salexigens_DSM_3043 3 3
Halomonas_elongata_DSM_2581 3 3
Methylomicrobium_alcaliphilum 3 2
Methylomonas_methanica_MC09 2 2
Frateuria_aurantia_DSM_6220 2 1
Xylella_fastidiosa_M23 1 1
Xanthomonas_axonopodis_pv._citri_str._306 1 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 7 7
Xanthomonas_campestris_pv._campestris_str._B100 9 1
Alkalilimnicola_ehrlichii_MLHE-1 5 5
Thiocystis_violascens_DSM_198 2 2
Photorhabdus_asymbiotica 12 12
Photorhabdus_luminescens_subsp._laumondii_TTO1 10 10
Xenorhabdus_bovienii_SS-2004 11 11
Xenorhabdus_nematophila_ATCC_19061 5 5
Providencia_stuartii_MRSN_2154 6 6
Proteus_mirabilis_HI4320 5 5
Edwardsiella_ictaluri_93-146 2 2
Edwardsiella_tarda_EIB202 1 1
Rahnella_sp._Y9602 2 2
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 1 1
Yersinia_pseudotuberculosis_IP_31758 5 5
Yersinia_pestis_Pestoides_F 4 4
Yersinia_enterocolitica_subsp._enterocolitica_8081 2 2
Serratia_proteamaculans_568 3 2
Dickeya_zeae_Ech1591 6 6
Pectobacterium_wasabiae_WPP163 11 10
Pectobacterium_sp._SCC3193 14 13
Pectobacterium_atrosepticum_SCRI1043 5 5
Pectobacterium_carotovorum_subsp._carotovorum_PC1 3 3
Pantoea_sp._At-9b 1 1
Pantoea_vagans_C9-1 1 1
Pantoea_ananatis_LMG_20103 8 2
Erwinia_tasmaniensis_Et1/99 3 2
Erwinia_sp._Ejp617 2 2
Erwinia_billingiae_Eb661 1 1
Erwinia_pyrifoliae_Ep1/96 2 2
Erwinia_amylovora_ATCC_49946 2 2
Cronobacter_turicensis_z3032 5 4
Cronobacter_sakazakii_ES15 6 5
Enterobacteriaceae_bacterium_strain_FGI_57 6 3
Shigella_sonnei_Ss046 3 3
Shigella_flexneri_5_str._8401 1 1
Salmonella_bongori_NCTC_12419 3 3
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 2 2
Klebsiella_oxytoca_E718 2 2
Klebsiella_pneumoniae_NTUH-K2044 2 2
Enterobacter_aerogenes_KCTC_2190 3 2
Escherichia_fergusonii_ATCC_35469 1 1
Enterobacter_sp._R4-368 7 5
Enterobacter_asburiae_LF7a 3 3
Enterobacter_cloacae_subsp._dissolvens_SDM 2 2
Citrobacter_rodentium_ICC168 3 3
Citrobacter_koseri_ATCC_BAA-895 1 1
Azotobacter_vinelandii_DJ 2 2
Pseudomonas_sp._TKP 3 3
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 5 4
Pseudomonas_entomophila_L48 10 10
Pseudomonas_syringae_pv._tomato_str._DC3000 6 6
Pseudomonas_fulva_12-X 3 2
Pseudomonas_putida_F1 5 5
Pseudomonas_protegens_Pf-5 4 3
Pseudomonas_fluorescens_SBW25 3 3
Pseudomonas_mendocina_ymp 5 4
Pseudomonas_aeruginosa_UCBPP-PA14 12 11
Pseudomonas_sp._VLB120 5 5
Moraxella_catarrhalis_RH4 2 2
halophilic_archaeon_DL31 1 1
Methanocella_arvoryzae_MRE50 1 1
Methanosarcina_acetivorans_C2A 1 1
Salinarchaeum_sp._Harcht-Bsk1 2 1
Natrinema_sp._J7-2 1 1
Natrialba_magadii_ATCC_43099 1 1
Halogeometricum_borinquense_DSM_11551 1 1
Halomicrobium_mukohataei_DSM_12286 1 1
Halorhabdus_utahensis_DSM_12940 1 1
Halobacterium_salinarum_R1 2 1
Halobacterium_sp._NRC-1 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   2 2
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   2 2
Neospora_caninum_Nc-Liverpool_6.2 1 1
Plasmodium_falciparum_HB3_ 12 12
Plasmodium_falciparum_Dd2_ 12 12
Arthrospira_platensis_NIES-39 1 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1 1
Calothrix_parietina_Calothrix_sp._PCC_6303 1 1
Cylindrospermum_stagnale_PCC_7417 1 1
Anabaena_cylindrica_PCC_7122 1 1
Frankia_sp._EuI1c 1 1
Streptomyces_albus_J1074 1 1
Streptomyces_davawensis_JCM_4913 1 1
Streptomyces_venezuelae_ATCC_10712 1 1
Saccharothrix_espanaensis_DSM_44229 1 1
Propionibacterium_acidipropionici_ATCC_4875 1 1
Deinococcus_peraridilitoris_DSM_19664 1 1
Faecalibacterium_prausnitzii_L2-6 1 1
Clostridium_acetobutylicum_DSM_1731 1 1
Clostridium_acetobutylicum_EA_2018 1 1
Enterococcus_faecium_Aus0085 1 1
Lactococcus_lactis_subsp._cremoris_NZ9000 1 1
Lactococcus_lactis_subsp._cremoris_SK11 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_167 1 1
Streptococcus_pyogenes_HSC5 3 3
Streptococcus_pyogenes_A20 1 1
Streptococcus_pyogenes_MGAS1882 1 1
Streptococcus_pyogenes_Alab49 3 3
Streptococcus_pyogenes_MGAS10750 2 2
Streptococcus_pyogenes_MGAS10270 2 2
Streptococcus_pyogenes_MGAS2096 2 2
Streptococcus_pyogenes_MGAS9429 3 3
Streptococcus_pyogenes_MGAS6180 2 2
Streptococcus_pyogenes_NZ131 2 2
Streptococcus_pyogenes_MGAS8232 5 5
Streptococcus_pyogenes_MGAS10394 5 5
Streptococcus_pyogenes_MGAS315 6 6
Streptococcus_pyogenes_SSI-1 5 5
Streptococcus_pyogenes_MGAS5005 1 1
Streptococcus_pyogenes_M1_GAS 3 3
Streptococcus_agalactiae_ILRI005 1 1
Bacteroides_fragilis_638R 1 1
Bacteroides_fragilis_NCTC_9343 1 1
Singulisphaera_acidiphila_DSM_18658 1 1
Campylobacter_jejuni_RM1221 1 1
Desulfocapsa_sulfexigens_DSM_10523 2 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2 2
Geobacter_sp._M18 1 1
Geobacter_sulfurreducens_PCA 2 2
Sorangium_cellulosum_So0157-2 35 26
Myxococcus_stipitatus_DSM_14675 14 11
Burkholderia_phenoliruptrix_BR3459a 1 1
Ralstonia_pickettii_12J 1 1
Ralstonia_solanacearum_FQY_4 6 6
Ralstonia_solanacearum_Po82 3 3
Ralstonia_solanacearum_PSI07 3 3
Ralstonia_solanacearum_CMR15 1 1
Ralstonia_solanacearum_GMI1000 4 4
Burkholderia_sp._YI23 7 6
Burkholderia_sp._CCGE1003 2 2
Burkholderia_sp._CCGE1001 4 4
Burkholderia_sp._KJ006 3 3
Burkholderia_thailandensis_MSMB121 10 9
Burkholderia_pseudomallei_MSHR305 9 8
Burkholderia_pseudomallei_NCTC_13179 9 8
Burkholderia_pseudomallei_BPC006 10 8
Burkholderia_pseudomallei_1026b 8 7
Burkholderia_pseudomallei_668 8 7
Burkholderia_pseudomallei_1710b 10 8
Burkholderia_pseudomallei_K96243 10 8
Burkholderia_mallei_NCTC_10229 7 6
Burkholderia_mallei_NCTC_10247 7 6
Burkholderia_mallei_ATCC_23344 7 6
Burkholderia_lata 9 9
Burkholderia_ambifaria_MC40-6 5 5
Burkholderia_cenocepacia_MC0-3 4 4
Burkholderia_cenocepacia_AU_1054 6 6
Burkholderia_cenocepacia_J2315 6 6
Burkholderia_multivorans_ATCC_17616 3 3
Burkholderia_cepacia_GG4 2 1
Variovorax_paradoxus_B4 12 9
Variovorax_paradoxus_EPS 13 12
Taylorella_asinigenitalis_14/45 9 7
Taylorella_equigenitalis_14/56 5 4
Taylorella_equigenitalis_ATCC_35865 6 5
Bordetella_parapertussis_Bpp5 2 1
Bordetella_bronchiseptica_MO149 2 1
Bordetella_bronchiseptica_253 2 1
Leisingera_methylohalidivorans_DSM_14336 1 1
Rhodobacter_sphaeroides_KD131 2 1
Rhodobacter_sphaeroides_2.4.1 2 1
Paracoccus_aminophilus_JCM_7686 4 3
Sinorhizobium_fredii_USDA_257 2 1
Rhizobium_etli_bv._mimosae_str._Mim1 1 1
Bradyrhizobium_japonicum_USDA_6 1 1
Bartonella_australis_Aust/NH1 1 1
Simiduia_agarivorans_SA1_=_DSM_21679 1 1
Aggregatibacter_actinomycetemcomitans_ANH9381 1 1
Mannheimia_haemolytica_D171 2 2
Haemophilus_influenzae_F3031 1 1
Haemophilus_influenzae_R2866 1 1
Aeromonas_hydrophila_ML09-119 2 2
Vibrio_fischeri_ES114 2 2
Vibrio_parahaemolyticus_BB22OP 3 3
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 2 2
Vibrio_anguillarum_Listonella_anguillarum_M3 4 4
Vibrio_nigripulchritudo_VibrioScope 2 2
Vibrio_vulnificus_CMCP6 2 2
Vibrio_vulnificus_YJ016 1 1
Vibrio_cholerae_LMA3984-4 2 2
Vibrio_cholerae_M66-2 3 3
Vibrio_cholerae_O395 3 3
Vibrio_cholerae_IEC224 3 3
Vibrio_cholerae_O1_str._2010EL-1786 3 3
Vibrio_cholerae_MJ-1236 3 3
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 3 3
Shewanella_baltica_BA175 1 1
Shewanella_baltica_OS117 1 1
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 1 1
Alcanivorax_dieselolei_B5 2 1
Thalassolituus_oleivorans_MIL-1 1 1
Xylella_fastidiosa_subsp._fastidiosa_GB514 1 1
Xylella_fastidiosa_Temecula1 1 1
Xylella_fastidiosa_9a5c 3 3
Xanthomonas_citri_subsp._citri_Aw12879 1 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 2 2
Xanthomonas_axonopodis_pv._citrumelo_F1 2 2
Xanthomonas_axonopodis_Xac29-1 1 1
Xanthomonas_oryzae_pv._oryzicola_BLS256 6 6
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 5 5
Xanthomonas_oryzae_pv._oryzae_KACC_10331 6 6
Xanthomonas_campestris_pv._raphani_756C 10 1
Xanthomonas_campestris_pv._campestris_str._8004 9 1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 9 1
Proteus_mirabilis_BB2000 2 2
Edwardsiella_tarda_C07-087 2 2
Edwardsiella_tarda_FL6-60 1 1
Rahnella_aquatilis_HX2 1 1
Yersinia_pseudotuberculosis_PB1/+ 6 6
Yersinia_pseudotuberculosis_YPIII 6 6
Yersinia_pseudotuberculosis_IP_32953 6 6
Yersinia_pestis_biovar_Microtus_str._91001 5 5
Yersinia_pestis_A1122 5 5
Yersinia_pestis_Z176003 5 5
Yersinia_pestis_D182038 5 5
Yersinia_pestis_D106004 5 5
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 5 5
Yersinia_pestis_Nepal516 5 5
Yersinia_pestis_Antiqua 5 5
Yersinia_pestis_Angola 2 2
Yersinia_pestis_CO92 5 5
Yersinia_pestis_KIM10+ 5 5
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 1 1
Yersinia_enterocolitica_subsp._palearctica_Y11 1 1
Serratia_marcescens_FGI94 6 5
Serratia_marcescens_WW4 4 4
Dickeya_dadantii_Ech586 4 4
Dickeya_dadantii_3937 5 5
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 3 3
Pantoea_ananatis_LMG_5342 13 3
Pantoea_ananatis_PA13 8 3
Pantoea_ananatis_AJ13355 11 3
Erwinia_pyrifoliae_DSM_12163 2 2
Erwinia_amylovora_CFBP1430 2 2
Cronobacter_sakazakii_CMCC_45402 5 4
Cronobacter_sakazakii_SP291 5 4
Cronobacter_sakazakii_ATCC_BAA-894 4 3
Shigella_sonnei_53G 4 4
Shigella_flexneri_2002017 1 1
Shigella_flexneri_2a_str._2457T 1 1
Shigella_flexneri_2a_str._301 1 1
Salmonella_bongori_N268-08 4 4
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 1 1
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 1 1
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 2 2
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 2 2
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 2 2
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 2 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 2 2
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 1 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 1 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 2 2
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 2 2
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._AKU_12601 2 2
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._ATCC_9150 2 2
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 2 2
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 1 1
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 1 1
Klebsiella_oxytoca_KCTC_1686 2 2
Klebsiella_pneumoniae_JM45 1 1
Klebsiella_pneumoniae_CG43 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_1084 2 2
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 1 1
Enterobacter_aerogenes_EA1509E 3 2
Escherichia_coli_E24377A 3 3
Escherichia_coli_E._coli_PMV-1 4 3
Escherichia_coli_LY180 3 3
Escherichia_coli_APEC_O78 2 2
Escherichia_coli_O7:K1_str._CE10 1 1
Escherichia_coli_O104:H4_str._2009EL-2050 4 4
Escherichia_coli_O104:H4_str._2009EL-2071 4 4
Escherichia_coli_O104:H4_str._2011C-3493 4 4
Escherichia_coli_P12b 1 1
Escherichia_coli_str._'clone_D_i2' 4 3
Escherichia_coli_str._'clone_D_i14' 4 3
Escherichia_coli_UM146 4 3
Escherichia_coli_042 4 3
Escherichia_coli_Xuzhou21 3 3
Escherichia_coli_IHE3034 5 4
Escherichia_coli_UMNK88 3 3
Escherichia_coli_O83:H1_str._NRG_857C 5 4
Escherichia_coli_ABU_83972 4 3
Escherichia_coli_KO11FL 3 3
Escherichia_coli_KO11FL 3 3
Escherichia_coli_LF82 7 5
Escherichia_coli_ED1a 4 2
Escherichia_coli_IAI39 1 1
Escherichia_coli_UMN026 4 3
Escherichia_coli_55989 4 4
Escherichia_coli_S88 4 3
Escherichia_coli_IAI1 2 2
Escherichia_coli_W 3 3
Escherichia_coli_W 3 3
Escherichia_coli_ATCC_8739 2 2
Escherichia_coli_SE11 3 3
Escherichia_coli_APEC_O1 5 4
Escherichia_coli_O103:H2_str._12009 3 3
Escherichia_coli_UTI89 4 3
Escherichia_coli_536 3 2
Escherichia_coli_HS 2 2
Escherichia_coli_ETEC_H10407 2 2
Escherichia_coli_O55:H7_str._RM12579 3 3
Escherichia_coli_O55:H7_str._CB9615 3 3
Escherichia_coli_O26:H11_str._11368 2 2
Escherichia_coli_CFT073 4 3
Escherichia_coli_O111:H-_str._11128 3 3
Escherichia_coli_O157:H7_str._TW14359 3 3
Escherichia_coli_O157:H7_str._EC4115 3 3
Escherichia_coli_O157:H7_str._Sakai 3 3
Escherichia_coli_O157:H7_str._EDL933 3 3
Escherichia_coli_B_str._REL606 2 2
Enterobacter_cloacae_EcWSU1 2 2
Enterobacter_cloacae_subsp._cloacae_ENHKU01 1 1
Enterobacter_cloacae_subsp._cloacae_NCTC_9394 1 1
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 3 3
Azotobacter_vinelandii_CA6 2 2
Azotobacter_vinelandii_CA 2 2
Pseudomonas_denitrificans_ATCC_13867 5 5
Pseudomonas_syringae_pv._phaseolicola_1448A 2 2
Pseudomonas_syringae_pv._syringae_B728a 12 4
Pseudomonas_stutzeri_CCUG_29243 3 3
Pseudomonas_stutzeri_DSM_10701 4 4
Pseudomonas_stutzeri_DSM_4166 1 1
Pseudomonas_stutzeri_RCH2 3 3
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 3 3
Pseudomonas_monteilii_SB3101 3 3
Pseudomonas_monteilii_SB3078 3 3
Pseudomonas_putida_H8234 2 2
Pseudomonas_putida_HB3267 4 4
Pseudomonas_putida_NBRC_14164 3 3
Pseudomonas_putida_DOT-T1E 5 5
Pseudomonas_putida_S16 4 4
Pseudomonas_putida_W619 3 3
Pseudomonas_putida_ND6 4 4
Pseudomonas_putida_KT2440 5 5
Pseudomonas_putida_GB-1 5 5
Pseudomonas_protegens_CHA0 3 2
Pseudomonas_poae_RE*1-1-14 3 3
Pseudomonas_fluorescens_F113 6 5
Pseudomonas_fluorescens_A506 3 3
Pseudomonas_fluorescens_R124 10 6
Pseudomonas_fluorescens_Pf0-1 8 8
Pseudomonas_mendocina_NK-01 1 1
Pseudomonas_aeruginosa_SCV20265 10 9
Pseudomonas_aeruginosa_MTB-1 11 9
Pseudomonas_aeruginosa_LES431 9 8
Pseudomonas_aeruginosa_RP73 10 9
Pseudomonas_aeruginosa_B136-33 11 10
Pseudomonas_aeruginosa_PA1R 11 10
Pseudomonas_aeruginosa_PA1 11 10
Pseudomonas_aeruginosa_DK2 10 9
Pseudomonas_aeruginosa_NCGM2.S1 11 10
Pseudomonas_aeruginosa_M18 10 9
Pseudomonas_aeruginosa_LESB58 10 9
Pseudomonas_aeruginosa_PA7 10 9
Pseudomonas_aeruginosa_PAO1 11 10
Acinetobacter_genomosp._13TU__RUH2624 1 1
Acinetobacter_baumannii__ATCC_19606 2 2
Methanomethylovorans_hollandica_DSM_15978 2 2
Halovivax_ruber_XH-70 2 2
Natronobacterium_gregoryi_SP2 1 1

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Longest transcript per gene
Genome     Number   Proteins
Rattus_norvegicus_69_3.4   (Norway rat)   2 2
Mus_musculus_69_38   (House mouse)   2 2
Ochotona_princeps_69   (American pika)   1 1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1 1
Petromyzon_marinus_69_7.0   (Sea lamprey)   11 4
Arabidopsis_thaliana_10   (Thale cress)   1 1

Others
Genome     Number   Proteins
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1 1
Lotus_japonicus__(Early_assembly) 1 1
Malus_x_domestica_(Duplicate)   (Apple)   1 1
Ricinus_communis__(Early_assembly)   (Castor bean)   1 1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1 1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1 1
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 2 2
NCBI_plasmid_sequences_(Plasmids) 67 63
TargetDB__(Targets) 60 55
PDB_chains_(SCOP_1.75)_(PDB) 11 11
UniProt__viral_sequences_(Viral) 122 119
NCBI_viral_sequences_(Viral) 185 182
Protein_Data_Bank_(all_PDB_sequenc) 330 330
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 442 442
STRING_v9.0.5_(STRING) 1101 947
Uniprot_2018_03_genome 17826 15655
NCBI_2017_08_genome 93148 84909
Protozoadb_2010_08_(Protozoadb) 46 38

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