SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for Calcium-mediated lectin superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Calcium-mediated lectin domain in that genome.

Complete genomes
Genome     Number   Proteins
Chromobacterium_violaceum_ATCC_12472 1 1
Ralstonia_solanacearum_CFBP2957 1 1
Burkholderia_ambifaria_AMMD 1 1
Burkholderia_cenocepacia_HI2424 3 3
Burkholderia_gladioli_BSR3 1 1
Photorhabdus_asymbiotica 2 2
Photorhabdus_luminescens_subsp._laumondii_TTO1 5 5
Xenorhabdus_nematophila_ATCC_19061 1 1
Serratia_sp._AS12 1 1
Serratia_plymuthica_AS9 1 1
Pseudomonas_aeruginosa_UCBPP-PA14 1 1

Strains
Genome     Number   Proteins
Sorangium_cellulosum_So0157-2 1 1
Ralstonia_solanacearum_FQY_4 1 1
Ralstonia_solanacearum_Po82 1 1
Ralstonia_solanacearum_PSI07 1 1
Ralstonia_solanacearum_CMR15 1 1
Ralstonia_solanacearum_GMI1000 1 1
Burkholderia_sp._CCGE1003 1 1
Burkholderia_lata 4 4
Burkholderia_ambifaria_MC40-6 2 2
Burkholderia_cenocepacia_MC0-3 3 3
Burkholderia_cenocepacia_AU_1054 3 3
Burkholderia_cenocepacia_J2315 3 3
Burkholderia_cepacia_GG4 2 2
Serratia_sp._AS13 1 1
Pseudomonas_aeruginosa_SCV20265 1 1
Pseudomonas_aeruginosa_MTB-1 1 1
Pseudomonas_aeruginosa_LES431 1 1
Pseudomonas_aeruginosa_RP73 1 1
Pseudomonas_aeruginosa_B136-33 1 1
Pseudomonas_aeruginosa_PA1R 1 1
Pseudomonas_aeruginosa_PA1 1 1
Pseudomonas_aeruginosa_DK2 1 1
Pseudomonas_aeruginosa_NCGM2.S1 1 1
Pseudomonas_aeruginosa_M18 1 1
Pseudomonas_aeruginosa_LESB58 1 1
Pseudomonas_aeruginosa_PA7 1 1
Pseudomonas_aeruginosa_PAO1 1 1

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Others
Genome     Number   Proteins
PDB_chains_(SCOP_1.75)_(PDB) 4 4
STRING_v9.0.5_(STRING) 32 32
Protein_Data_Bank_(all_PDB_sequenc) 180 180
Uniprot_2018_03_genome 392 392
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 412 412
NCBI_2017_08_genome 4142 4142

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