gi|302875920|ref|YP_003844553.1| from Clostridium cellulovorans 743B

For a sequence (see Protein sequence) in target, dcGO predictor has the following procedures to predict the ontology terms of the target:

First, obtain Domain architecture and its residual domains and supra-domains from the SUPERFAMILY database.

Then, use the domain-centric annotations to predict the ontology terms of the target:

If a target contained a domain/supra-domain, then all ontology terms associated to that domain/supra-domain are transferred to the target (together with hypergeometric score, h-score);
When a target-to-term transfer is supported by one or more residential domains/supra-domains, sum up h-scores to calculate predictive score (p-score);
The p-score is then rescaled to the range of 0-1. For each namespace (e.g., three sub-ontologies for GO), p-score=(SUM-MIN)/(MAX-MIN), where SUM is the sum of all h-scores to support a term transferred to the target, MIN and MAX are respectively the minimum and maximum of SUM over a whole list of predicted terms for the target;

Finally, the predictive score being rescaled is used to rank the predictions. The higher value of the p-score indicates the more evident the prediction is. In the dcGO, each ontology has a slim version on its own, containing ontological terms at four levels of increasing granularity (that is, being highly general, general, specific, and highly specific). Listed in the table are the top 5 predictions for each specificity and for each namespace. In addition to those restricted by the term specificity, i.e., Export prediction (slim version), the full list of predictions are also provided for the download, i.e., Export prediction (full version).

MKKLLSLILTITMVLGMLVPVYGETNAQTAMESITKVPSGFVYREGTKFMLDGNTFYYAG TNNYYLNFKSKAEVDDVIDDAADMGLKVIRTWGFLDVGTLNADGTLTNNVDGSGSKDGVY FQYWDTKTNAPAYNTGDNGLKVLDYAIYKASQKGIRLLIPFTNNWEAFGGMMQYCKWLGL SQKDMFYTNPTIKQYYKNYVNMLLNRTNAYSGIKYKDDPTIFSWELANEPRCGTDTTGDT VVNWSKEMSEYVKTVDPYHMVCLGDEGFYNYAYNTAGIDGTWPYHGSEGIDWNRIVALPT IDFGTIHIYCDQWGTNAAWGTEWIRKHAEDAKALNKPAILEEFGWKDRSTRDQVFTDWLN VIEGNKYSGLELAGDNYWMLAGLQKDGSVYPDYDQYTVYWDVPNNPTATTAKLIQNHATN MTNKNLANIRNKITPSTATYDKNVGKGQSISVTVDPKEGTFAAVKNGTRALVAGADYTVL GNNIIIEKAYLDTLELGSTLLTFDISAGYDPVMAISVIDSNIVVVDSTITPTSVTFDKTV PNDITVTITPNGNLLKTLFNLYTPLVQGTDYVISGNNVTIKQSYLSKLENGTTALTFDFN QGTDPTLIVAVKKSVLPTGFVKADGTKFVVDGHPFYFAGANSYDLFTYGDGSSTSTTTDI ETKFMYKSQIDNIMSQMASDGVTVLRTWGFSNETWHGFETAKGVYNEAEFMLFDYIMDSA RRNGIKVIITLENYWEAYGGIDKKLQWEGLSGGSHTARAQFFTNENCKAHYKVYAEHFIN RVNHYTGVAYKDDPTIFAWDLMNEPRYQDAKVNENATGVTLRKWVDEMGGYIKSIDPNHM VCAGIEGHESRYGFGGDEGNPFIYIQQSPGVDFCSSHPYPDESWANLTPSQNASLMEKWI SDAHNIVGKPFVAGEFNTHDNKEAYWVSVFGEIEEHNAAGGLFWEYNFRRLSNFTVVHGD SILEYFKAHSARMSVKNVPENYVTPIKATFDRKADKQEDIALTMKLLEGNTLVAIKNGET QLKQGIDYIVEEEQVVISKNYLGNLPFEDVTFTFDISSGYDPIVTIAITDSGILNSTVTP EVAIFDKNIRKQADITISMTTNGNAFVALKNGATSLIGGTDYTVLGENVVIKKSYLQSQN LGELSLKFDFNQGIDPMLKITVKDSTGEDIIDNFESYSATNPNLQTAYVKNSSGNVVAVM LESAIKGEGSYSMSYAYTIGSPNYAGITKDLSGKSFVGYKGVAFWISPDGSNRDFTIQIK ETSGEYWEATYKLSSLVATNVSLEFSKFTHPSWYSGGNGVFDLESITEYSMYIGQGLGTT GGGTIYIDNIKLIDSAIAVIKGDVNGDKIVNAIDLAYLKKYILDNTILINMECADMNNDS KVNAIDLAMLKKVILGVA

LINKOUT

gi|302875920|ref|YP_003844553.1| (Clostridium cellulovorans 743B)

Protein sequence

Domain architecture