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ENSDORP00000002958 (Dipodomys ordii 76_1)
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For a sequence (see Protein sequence) in target, dcGO predictor has the following procedures to predict the ontology terms of the target:
First, obtain Domain architecture and its residual domains and supra-domains from the SUPERFAMILY database.
Then, use the domain-centric annotations to predict the ontology terms of the target:
- If a target contained a domain/supra-domain, then all ontology terms associated to that domain/supra-domain are transferred to the target (together with hypergeometric score, h-score);
- When a target-to-term transfer is supported by one or more residential domains/supra-domains, sum up h-scores to calculate predictive score (p-score);
- The p-score is then rescaled to the range of 0-1. For each namespace (e.g., three sub-ontologies for GO), p-score=(SUM-MIN)/(MAX-MIN), where SUM is the sum of all h-scores to support a term transferred to the target, MIN and MAX are respectively the minimum and maximum of SUM over a whole list of predicted terms for the target;
Finally, the predictive score being rescaled is used to rank the predictions. The higher value of the p-score indicates the more evident the prediction is. In the dcGO, each ontology has a slim version on its own, containing ontological terms at four levels of increasing granularity (that is, being highly general, general, specific, and highly specific). Listed in the table are the top 5 predictions for each specificity and for each namespace. In addition to those restricted by the term specificity, i.e., Export prediction (slim version), the full list of predictions are also provided for the download, i.e., Export prediction (full version).
Protein sequence
Comment |
pep:novel genescaffold:dipOrd1:GeneScaffold_3475:1505:57812:-1 gene:ENSDORG00000003159 transcript:ENSDORT00000003161 gene_biotype:protein_coding transcript_biotype:protein_coding |
Sequence length |
2793 |
Sequence |
VIQEGPCLVRRVSRDFPMAWGPPSRLLLACVVLLCMTDGQGRWHGAVEPVGPGRVRRRGG
PGFLLQGPNICGSHFHAYCCPGWRTLPGGNRCIVPICRHPCGQGFCSQPNLCTCVDGTLA
PSCGVSPELGCSISCMNGGSCRGASCLCQRGYRGTVCGQPICNPSCQNGGRCIGPNLCAC
VYGFLGSHCETDYRTGPCFSQVGSKGCQHQPRGLTFTKALCCATVGHAWGLPCEPCPPQP
HPCRRGFIPSIRTGACQDVDECQAIPGLCQGGSCTNTVGSFKCRCPVGHRLSASGVTCED
RRLGTCFSVLISGHCAAALGGRYPRRQCCCDLGRCWAASLPLELCPSPGSDEFRRLCNLG
QARLPSYPSLFPGLPGFRSSGTEPARPSPRGSSGPGVPSLGPGNPNIXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXIDECLISPDLCGQGVCVNTPGSFECECFPGYTSGFMLMKNCMDVD
ECVRDPLLCRGGSCTNTDGSFECRCPPGHKLTAQGTACEDIDECALRDSLCLHGQCVNLI
GTFHCVCHSGFQVTPERQGCQDIDECRVGNGGCEAHCVNTEGSFQCSCGQGYVLRPDGRA
CADVDECEENPAVCGQGRCTNEPGGHRCLCYEGFTAAPDAKTCVDVNECDLNPDICLHGN
CENTKGSFVCHCQLGYIVRKGATSCSDLDECEPGQDSCDSHASCLNTPGSFSCRCRPGWV
GDGFKCHDMDECTTPEHHCSPRADCLNVPGSYRCACRPGFRDECAENMDLCENGHCLNVP
GGYYCECEMGFTPTGDHGACQDVDECALETLCVPGSCENLPGMFCCLCEDGYELDHGGSH
CTDINECADPVNCINGQCINTPGSYLCNCPQDFELNPSGVGCVDTRAGNCFLEMHSRGDG
GVSCSAEVGVGVTRASCCCSLGRAWGNPCELCPMGNTSEYRTLCPGGEGFRPNPNTVILE
DIDECQELSGLCQGGNCANTFGSFQCECPHGYQLSGDTRICEDIDECATQLGICGPGTCY
NTLGNYTCICPAEYLQVNGGNNCMDMRKSMCFRYYNGTCRHELAFNITQKMCCCSYNIGQ
AWNRPCEACPTPASSDYQVLCGSQVPGFITDMHTGRPRDIDECREIPAICTHGVCINQAG
NFHCECPMGFQYHSDLLACEDVDECGTTESPCGRKESCVNIPGSYRCECAQGFTLSPRGV
CVGWNECQEIMNVCGHGDCVDMEGSYVFLCHHGFRASADQTLCMDLDECDWWPYGNGTCK
NTIGSYNCLCFPGFAASHNGDCVDTDECTILVGQVCQFGQCLNIAGSFLCICQDGFELTA
DGRNCVDTNECVTLSESCLPGVCQNLEGSFRCSCPLGFQVQREHCVDIDECLEEPNICPF
GTCINSPGSFTCLCPPGFVPSENGHRCFDTRQSFCFTRFEAGKCLVPKAFNNTKTRCCCS
KRPGEGWGDPCELCPQEGSAAFQELCPFGHGAVPGPDDSREDVNECAENPGICANGLCVN
TDGSFRCECSFGYSLDFTGISCVDTDECSLGHPCGEGTCTNVIGGFECACADGFEPGPMT
ICEDIDECSLNPLLCAFRCLNIEGSYLCTCPAGYALREDRATCRXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTRQGLCFTEVLQAVCQVRSGSDETVPWAVCCCGGGRGWGPQCEPCPLR
GTSTFWKLCPHGSGYTTEGRDVDECRVLTHLCFHGECINTVGSFHCHCQAGYTPDAAATA
CVDVDECSQDPKPCPFLCKNTEGSFLCACPRGYRLEEDGRTCRDLDECSSRHHNCQFICV
NTIGTFSCRCPPGFTQRHQACFDNDECSAQPGPCGTQGRCHNSPGNFHCECYQGFTLDSS
GRSCEDIDECDGPHSCHDGCQNELGGYCCNCPHSQWAQYVXXXXXXXXXXXXXXXXHNTH
GGFHCVCSSCNFNQALGGCHDVKECVGQGSPCSFCANTAGSFLCGCPQGYFRAGQGHCVS
SLGFGHEPQESSYENKALSSETCYECSINSLSPQDRPQRSPRHHQVSLATFDTEVHLTLS
LNLSRLGQAQHILGLQPALEGLAGRVRYIISHGNQQGFFRMQHQGILSYLQLGRRRPQPG
MYQLEVVSVPGPQGVWPGPVGQALRLQVRLQLL
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Domain architecture

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