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ENSTGUP00000003351 (Taeniopygia guttata 76_3.2.4)
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For a sequence (see Protein sequence) in target, dcGO predictor has the following procedures to predict the ontology terms of the target:
First, obtain Domain architecture and its residual domains and supra-domains from the SUPERFAMILY database.
Then, use the domain-centric annotations to predict the ontology terms of the target:
- If a target contained a domain/supra-domain, then all ontology terms associated to that domain/supra-domain are transferred to the target (together with hypergeometric score, h-score);
- When a target-to-term transfer is supported by one or more residential domains/supra-domains, sum up h-scores to calculate predictive score (p-score);
- The p-score is then rescaled to the range of 0-1. For each namespace (e.g., three sub-ontologies for GO), p-score=(SUM-MIN)/(MAX-MIN), where SUM is the sum of all h-scores to support a term transferred to the target, MIN and MAX are respectively the minimum and maximum of SUM over a whole list of predicted terms for the target;
Finally, the predictive score being rescaled is used to rank the predictions. The higher value of the p-score indicates the more evident the prediction is. In the dcGO, each ontology has a slim version on its own, containing ontological terms at four levels of increasing granularity (that is, being highly general, general, specific, and highly specific). Listed in the table are the top 5 predictions for each specificity and for each namespace. In addition to those restricted by the term specificity, i.e., Export prediction (slim version), the full list of predictions are also provided for the download, i.e., Export prediction (full version).
Protein sequence
Comment |
pep:known_by_projection chromosome:taeGut3.2.4:17:2775323:2822825:-1 gene:ENSTGUG00000003200 transcript:ENSTGUT00000003385 gene_biotype:protein_coding transcript_biotype:protein_coding |
Sequence length |
2153 |
Sequence |
GGLIKRIIRQKRETGLNVTLPEDNQPVVFNHVYNIKLPVGSLCSVDLDTASGDADLKAEI
EPVKNYEEHTVNEGNQIVFTHRINIPRRACGCAAAPDIKDLLSRLEELEGLVSSLREQCA
SGAGCCPNSQAAEGRLDTTPYCSGHGNYSIEICGCICEPGWKGPNCSQASCPSDCNDQGK
CVDGLCVCFEGYTGPDCSQELCAQGCGAHGRCVGGQCLCHEGFVGDDCSVPLCPHNCHGR
GRCVDSECVCDEGYTGEDCSELICPNDCFDRGRCVNGTCFCEEGFTGEDCGELTCPNDCH
GNGRCENGLCVCYEGFVGDDCSERRCPNDCHNRGRCVGGRCVCHEGYLGEDCAELRCPND
CNNRGHCENGQCVCHEGFIGEDCGELRCPNDCHNRGRCENGQCVCHEGFTGDDCGQLRCP
SDCHNRGLCVNGQCVCDEGYTGEDCAELRCPNDCHNRGRCVEGHCECDNGFMGDDCGELA
CPNNCHGRGRCENGRCVCHEGFVGEDCRERSCPNDCNNAGRCVDGRCVCEDGYIGDDCSD
GRCTKEKREMFQSLLHMCVCVEAAGTQSARVSPPTELTVTNVTDKTVNLEWKHENLVNEY
LITYVPTSSGGLDMQFTVPGNHTAATIHELEPGVEYFIRVFAILKNKKSIPVSARVATYL
PAPEGLRFKSVRETSVQVEWDPLNFSFDGWELVFHNMKKDDNGDITSSLKRPETSYMQPG
LAPGQQYNVSIHIVKNNTRGPGLSKVITTKLDAPSQVEAKDVTDTTALITWSKPLAEVEG
VELTYGPKDIPGDRTTIDLSEDENQYSIGNLRPHTEYEVTLVSRRGDMESDPVKEIFVTD
LDAPRNLKRVSQTDSSITLEWKNSHANVDNYRIKFAPISGGDHMEITVPKGNQATTRATL
TGLRPGTEYGIGVTAVRNDRESAPATINAGTDLDNPKDLEVSEPTETTLSLRWRRPVAKF
DHYRLVSTSPSGKKSEVEIPVDSTSFLLRGLEPGTEYTISLLAEKGRHKSKPTTVKGSTE
ELPEINHTALVNVGWSGKMRANFCDLTQGSLTHPHIPAHLCWLVAAALGGSVRTRLGVLM
LPLLEAWTHSQCTAHRVCCLEGYYQEILALFSTSEEEPELGELSVSEPGWDGFQLTWTAA
DGAYENFVLQVQESGKPEETRNVTVPGTLSSVNVTGLKANTSYTITLQGVTRGYRSKPLS
LETATGEQPGIAELTVSDITPESFNLSWTASNGDFDAFTIEIIDSNRLLEPMEFNLSGNS
RTAHISGLSPSTDFIVYLSGISRGFRTQAISAAATTANIPRTNKLSVSNATSDSLSLTWE
AQDKAFDHFILEVRNSDFPLDSLVLTMPGDSRHSVVTNLKAATNYTVQLHGVIDGQGGQT
LTAMATTEAEPQLGTLTLTNVTPDSFNLSWTTQDGPFATFVIKIQDSLAAQEAQELTVPG
GTRSAHISGLTDHTAYDIHIRGTTRAGVPTEPLTAFVTTEAMPPLENLTVSDMNPYGFTV
SWMASENAFDNFLVVVVDSGKLLDPQEFLLSGAQRELKLKGLITGIGYEVLLYGFAKGHQ
TKPLSALAVTEAEPEVDNLLVSDATPDGFRLSWTADDGVFNSFVLKIRDTKRKSDPLELI
VPGHERTQDITGLKEGTEYEIELYGIGSGQRSQPVNTVASTAVGSPKGISFSDITENAAT
VSWTPPRSRVENFRISYVPVTGGTPNVVTVEGSKTRTKLVKLVPGVDYNVSVISVKGFEE
SEPVSGILKTALDSPSGLVVVNITDSEALATWQPAIAAVDNYVVSYSSEKEPEVTQLVSG
NTVEYDLKGLQPATEYTLSVRAQKDAQSSETLSTHFTTGLDAPRDLSATEVQSEAAVISW
RPPRAPVTGYLLIYESIDGRVKEVILNPETTSYSLTELSPSTQYTVKLQALSGALRSKTI
QIIFTTTGLLYPYPKDCSQALLNGEATSGLYTIYLNGDKAQPLQVFCDMGEDGGGWIVFL
RRQNGKQDFYKNWNTYVAGFGDPKEEFWIGLENLHKITSQGQYELRVDLRDKGDTAYAVY
DRFSVGDAKSRYRLRVDGYSGTAGDSMTYHNGRSFSTFDKDHDSAITNCALSYKGAFWYK
NCHRVNLMGRYGDNNHSQGVNWFHWKGHEYSIQFAEMKLRPSSFRLEGRRKRA
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Domain architecture

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