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Domain assignment for gi|428297023|ref|YP_007135329.1| from Calothrix parietina Calothrix sp. PCC 6303

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|428297023|ref|YP_007135329.1|
Domain Number 1 Region: 108-344
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 1.8e-22
Family Extended AAA-ATPase domain 0.032
Further Details:      
 
Domain Number 2 Region: 601-745
Classification Level Classification E-value
Superfamily TPR-like 0.00000000119
Family Tetratricopeptide repeat (TPR) 0.063
Further Details:      
 
Domain Number 3 Region: 14-58
Classification Level Classification E-value
Superfamily Sigma3 and sigma4 domains of RNA polymerase sigma factors 0.000000288
Family Sigma4 domain 0.028
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|428297023|ref|YP_007135329.1|
Sequence length 757
Comment sigma-70 region 4 type 2 [Calothrix sp. PCC 6303]
Sequence
MLSRNFLSQIAYEHELSPEQQQVFLMRIGDGLSYEEIAAQLNTSADACLKRMGQVYKKFN
ISGASRGKESKLRFFLTNRLEKVTEESSAHTQSIEEKKQETQPNSVAQNLPVREYTTFVG
RDQEITRLMELLDFQHTAHLISVDGIGGVGKTTLVVEVAYRCLQASNNQLLTPNLPTFEA
IIFTSAKQNHLTSIGILPRLTKERTLRDICREVARILDLSEITNLPIEEQFQPIREKLSQ
TRTLLIVDNLETIENQQEVLSFLYDLPPSVKVIITTREQALFVPIRLGCLPREHGLCLIQ
QEAQEKSINLTAEESQQLFEGVSGIPAAIIYVIGQIAAGYSLEDALSQIKEPDGDVARFC
FAGSVIPLRGTPPHYLLMALSLGVKPITRETAASVAFEQADPILTSQGLAKLQQLSLVYH
QQGRYSLLELTREYAASELAANRELAQQLQQRWVNWYIRFSEVYGGTNWKEWHLGYSYLE
IEWENLRSVLEWCMSQGIYGDARTIWQQIKGYIHVRGYWDERLEWTAWLIETAKQAGDWK
FTVEVMCDRAITLIRMRHENQLTEAEILLQEAWNLRQHQSIALQLEIATNMVILSIYQQK
WQQAGEWLTEEEKLLTQTSLSELERQQQQVHILYYQGQISFKTGNYQQAQSFFLQALESA
TTAGWLRATTAIQNWLADIALELGNLKQARQLLEISFPMAERHKDKLSIAYHKATFAKLE
KRSGNLPQAKRLAKEAAEGFESLKMVVEAKEMRSLLS
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Identical sequences K9UW19
gi|428297023|ref|YP_007135329.1| WP_015196015.1.40975

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