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Domain assignment for gi|428301308|ref|YP_007139614.1| from Calothrix parietina Calothrix sp. PCC 6303

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|428301308|ref|YP_007139614.1|
Domain Number 1 Region: 182-374
Classification Level Classification E-value
Superfamily TPR-like 1.29e-30
Family Tetratricopeptide repeat (TPR) 0.012
Further Details:      
 
Domain Number 2 Region: 476-547
Classification Level Classification E-value
Superfamily Sigma3 and sigma4 domains of RNA polymerase sigma factors 0.0000000135
Family Sigma4 domain 0.015
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|428301308|ref|YP_007139614.1|
Sequence length 552
Comment sigma-70 family RNA polymerase sigma factor [Calothrix sp. PCC 6303]
Sequence
MSQDLLARLTEAKSDSERAWIVTQSLLDALPAELSQMIWAAAIPHWFDGNILAALRPEFA
TQADELYIKIQSLSFVEVFAERGYNIHELTRKLILDHLWEENKEEFLTLSLRLSEYFQNQ
DTAEAKIEWLYHLAVTDTDGAGNTIDNYFIDLNNSFRYGEIETLANVLLEQVAANRVNST
IKAIVYYRKGQAEAKSYRSQAALSHYESALVLYREVGSRLGEANTLIGIGDVFQFLGRPK
EALSHYESALVLYREVGSRLGEANTLVGIGDVLQFLYRLEEALSHYESALVLYREVGSRL
GEATALEAISCVLQLLDRTEEALSQRENALALYREVSSRLGEATALEAIGNVLQFLDRPE
ETLSNYENAITLYDEIDSHLSQVVSQTLQSQWLSAYIKHRLLRLKPNVSEEDVLHYVIVS
LIEAVKSGMEVRHPVTWGKLVADRYINKQYKLSRQSIIVKPRMLEFFGNVHRQELSSAFD
TDDTEYLQSQIARLKERDRQIIQWRFFDNLSWSEIAVRLSSKTKPVTEQGARQRGKRALD
ALRSLYTENIES
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Identical sequences K9V886
gi|428301308|ref|YP_007139614.1| WP_015200256.1.40975

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