SUPERFAMILY 1.75 HMM library and genome assignments server

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gp120 core superfamily domain assignments
in
TargetDB

Network of domain occurrence in all genomes


Assignment details

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TargetDB (Targets) has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
W00029   4.32e-171   55-103,168-273,303-464   gp120 core  
 
Weak hits:
Lmaj005552AAC   0.0216   86-194   gp120 core  
MrR54   0.0298   110-153   gp120 core  
Tcru015414AAA   0.0902   91-147   gp120 core  

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View all assignments containing a gp120 core domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   420574 420574
No Yes NCBI 2017_08 genome   8 7
No Yes Uniprot 2018_03 genome   294299 229130
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI viral sequences (Viral)   4 4
No Yes PDB chains (SCOP 1.75) (PDB)   14 14
No Yes Protein Data Bank (all PDB sequenc)   558 427
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   905 739
No Yes TargetDB (Targets)   1 1
No Yes UniProt viral sequences (Viral)   124778 106972

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