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Transposase IS200-like family domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   11293 11293
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 2 2
No Yes Halothece sp. PCC 7418   2 2
No Yes Rivularia sp. PCC 7116   11 11
No Yes 'Nostoc azollae' 0708   1 1
No Yes Nostoc sp. PCC 7120   1 1
No Yes Nostoc sp. PCC 7524   1 1
No Yes Anabaena sp. 90   2 2
No Yes Slackia heliotrinireducens DSM 20476   1 1
No Yes Frankia sp. EAN1pec   1 1
No Yes Thermobifida fusca YX   2 2
No Yes Streptosporangium roseum DSM 43021   2 2
No Yes Streptomyces violaceusniger Tu 4113   1 1
No Yes Mycobacterium vanbaalenii PYR-1   1 1
No Yes Mycobacterium gilvum PYR-GCK   1 1
No Yes Chloroflexus aggregans DSM 9485   6 6
No Yes Truepera radiovictrix DSM 17093   11 11
No Yes Deinococcus geothermalis DSM 11300   1 1
No Yes Deinococcus radiodurans R1   8 8
No Yes Meiothermus silvanus DSM 9946   3 3
No Yes Finegoldia magna ATCC 29328   1 1
No Yes Megamonas hypermegale   1 1
No Yes Selenomonas sputigena ATCC 35185   6 6
No Yes Natranaerobius thermophilus JW/NM-WN-LF   2 2
No Yes Clostridium clariflavum DSM 19732   9 9
No Yes Clostridium cellulolyticum H10   7 7
No Yes Ruminococcus sp.   1 1
No Yes butyrate-producing bacterium SS3/4   1 1
No Yes Candidatus Desulforudis audaxviator MP104C   3 3
No Yes Pelotomaculum thermopropionicum SI   2 2
No Yes Desulfitobacterium hafniense Y51   3 3
No Yes Desulfotomaculum reducens MI-1   1 1
No Yes Desulfotomaculum acetoxidans DSM 771   2 2
No Yes Desulfotomaculum kuznetsovii DSM 6115   1 1
No Yes Clostridium difficile 630   1 1
No Yes Filifactor alocis ATCC 35896   9 9
No Yes Clostridium saccharolyticum WM1   5 5
No Yes Eubacterium rectale M104/1   1 1
No Yes Roseburia hominis A2-183   7 7
No Yes Roseburia intestinalis   1 1
No Yes Butyrivibrio proteoclasticus B316   1 1
No Yes Clostridium tetani E88   2 2
No Yes Caldicellulosiruptor obsidiansis OB47   2 2
No Yes Caldicellulosiruptor owensensis OL   1 1
No Yes Caldicellulosiruptor lactoaceticus 6A   2 2
No Yes Caldicellulosiruptor kristjanssonii 177R1B   1 1
No Yes Caldicellulosiruptor saccharolyticus DSM 8903   1 1
No Yes Caldicellulosiruptor bescii DSM 6725   1 1
No Yes Thermoanaerobacterium xylanolyticum LX-11   6 6
No Yes Thermoanaerobacterium thermosaccharolyticum DSM 571   1 1
No Yes Carboxydothermus hydrogenoformans Z-2901   1 1
No Yes Ammonifex degensii KC4   4 4
No Yes Thermoanaerobacter wiegelii Rt8.B1   1 1
No Yes Acetohalobium arabaticum DSM 5501   2 2
No Yes Halanaerobium praevalens DSM 2228   4 4
No Yes Tetragenococcus halophilus NBRC 12172   2 2
No Yes Lactobacillus kefiranofaciens ZW3   2 2
No Yes Lactobacillus johnsonii FI9785   1 1
No Yes Lactobacillus sanfranciscensis TMW 1.1304   1 1
No Yes Lactobacillus ruminis ATCC 27782   2 2
No Yes Lactobacillus fermentum IFO 3956   8 8
No Yes Lactobacillus amylovorus GRL1118   4 4
No Yes Lactobacillus reuteri DSM 20016   16 16
No Yes Lactobacillus acidophilus 30SC   3 3
No Yes Streptococcus pseudopneumoniae IS7493   1 1
No Yes Streptococcus equi subsp. equi 4047   2 2
No Yes Streptococcus mitis B6   2 2
No Yes Streptococcus parasanguinis ATCC 15912   1 1
No Yes Streptococcus suis P1/7   2 2
No Yes Streptococcus salivarius 57.I   1 1
No Yes Exiguobacterium sibiricum 255-15   1 1
No Yes Kyrpidia tusciae DSM 2912   1 1
No Yes Brevibacillus brevis NBRC 100599   3 3
No Yes Salinibacter ruber M8   1 1
No Yes Sphaerochaeta globus str. Buddy   1 1
No Yes Calditerrivibrio nitroreducens DSM 19672   2 2
No Yes Thermotoga sp. RQ2   3 3
No Yes Thermotoga naphthophila RKU-10   3 3
No Yes Thermotoga petrophila RKU-1   2 2
No Yes Thermotoga maritima MSB8   2 2
No Yes Desulfurobacterium thermolithotrophum DSM 11699   1 1
No Yes Thermocrinis albus DSM 14484   1 1
No Yes Sebaldella termitidis ATCC 33386   2 2
No Yes Leptotrichia buccalis C-1013-b   3 3
No Yes Acidithiobacillus caldus SM-1   1 1
No Yes Helicobacter bizzozeronii CIII-1   2 2
No Yes Helicobacter acinonychis str. Sheeba   2 2
No Yes Desulfomonile tiedjei DSM 6799   2 2
No Yes Desulfovibrio piezophilus   3 3
No Yes Hippea maritima DSM 10411   1 1
No Yes Rickettsia massiliae MTU5   11 11
No Yes Vibrio cholerae O395   5 5
No Yes Shewanella baltica OS185   2 2
No Yes Shewanella woodyi ATCC 51908   9 9
No Yes Marinobacter aquaeolei VT8   1 1
No Yes Methylomonas methanica MC09   2 2
No Yes Nitrosococcus watsonii C-113   2 2
No Yes Nitrosococcus halophilus Nc4   4 4
No Yes Nitrosococcus oceani ATCC 19707   1 1
No Yes Photorhabdus luminescens subsp. laumondii TTO1   2 2
No Yes Cronobacter sakazakii ES15   1 1
No Yes Klebsiella oxytoca E718   3 3
No Yes Enterobacter sp. R4-368   1 1
No Yes Desulfurococcus kamchatkensis 1221n   1 1
No Yes Metallosphaera sedula DSM 5348   1 1
No Yes Sulfolobus tokodaii str. 7   7 7
No Yes Sulfolobus solfataricus P2   1 1
No Yes Vulcanisaeta moutnovskia 768-28   1 1
No Yes halophilic archaeon DL31   1 1
No Yes Methanocella conradii HZ254   2 2
No Yes Methanosaeta concilii GP6   1 1
No Yes Methanosarcina mazei Go1   2 2
No Yes Archaeoglobus profundus DSM 5631   1 1
No Yes Thermococcus sibiricus MM 739   1 1
No Yes Pyrococcus yayanosii CH1   2 2
No Yes Thermoplasma volcanium GSS1   2 2
No Yes Thermoplasma acidophilum DSM 1728   1 1
No Yes Natrialba magadii ATCC 43099   1 1
No Yes Halorubrum lacusprofundi ATCC 49239   6 6
No Yes Halogeometricum borinquense DSM 11551   1 1
No Yes Haloferax mediterranei ATCC 33500   1 1
No Yes Haloferax volcanii DS2   1 1
No Yes Halomicrobium mukohataei DSM 12286   1 1
No Yes Natronomonas pharaonis DSM 2160   2 2
No Yes Haloarcula hispanica ATCC 33960   1 1
No Yes Haloarcula marismortui ATCC 43049   1 1
No Yes Halobacterium salinarum R1   3 3
No Yes Halobacterium sp. NRC-1   3 3
No Yes Methanocaldococcus sp. FS406-22   1 1
No Yes Chroococcidiopsis thermalis PCC 7203   2 2
No Yes Crinalium epipsammum PCC 9333   2 2
No Yes Oscillatoria nigro-viridis PCC 7112   2 2
No Yes Arthrospira platensis NIES-39   3 3
No Yes Cyanothece sp. PCC 7822   3 3
No Yes Cyanothece sp. PCC 7424   5 5
No Yes Cyanothece sp. PCC 8801   3 3
No Yes Cyanobacterium aponinum PCC 10605   2 2
No Yes Cyanobacterium stanieri PCC 7202   1 1
No Yes Stanieria cyanosphaera PCC 7437   2 2
No Yes Frankia sp. CcI3   3 3
No Yes Streptomyces albus J1074   1 1
No Yes Mycobacterium canettii CIPT 140070017   1 1
No Yes Clostridium acidurici 9a   2 2
No Yes Desulfitobacterium hafniense DCB-2   1 1
No Yes Desulfotomaculum gibsoniae DSM 7213   5 5
No Yes Clostridium perfringens SM101   9 9
No Yes Clostridium perfringens str. 13   1 1
No Yes Clostridium pasteurianum BC1   1 1
No Yes Clostridium botulinum Ba4 str. 657   3 3
No Yes Clostridium botulinum A3 str. Loch Maree   1 1
No Yes Thermoanaerobacterium saccharolyticum JW/SL-YS485   4 4
No Yes Thermoanaerobacterium thermosaccharolyticum M0795   1 1
No Yes Thermacetogenium phaeum DSM 12270   3 3
No Yes Enterococcus mundtii QU 25   1 1
No Yes Lactobacillus johnsonii N6.2   2 2
No Yes Lactobacillus johnsonii DPC 6026   1 1
No Yes Lactobacillus johnsonii NCC 533   1 1
No Yes Lactobacillus salivarius UCC118   3 3
No Yes Lactobacillus fermentum F-6   27 27
No Yes Lactobacillus amylovorus GRL 1112   5 5
No Yes Lactobacillus reuteri TD1   1 1
No Yes Lactobacillus reuteri I5007   1 1
No Yes Lactobacillus reuteri JCM 1112   16 16
No Yes Lactobacillus reuteri SD2112   4 4
No Yes Lactobacillus helveticus H10   1 1
No Yes Lactobacillus delbrueckii subsp. bulgaricus ND02   3 3
No Yes Streptococcus equi subsp. zooepidemicus ATCC 35246   7 7
No Yes Streptococcus equi subsp. zooepidemicus MGCS10565   1 1
No Yes Streptococcus iniae SF1   4 4
No Yes Streptococcus parasanguinis FW213   3 3
No Yes Streptococcus suis S735   1 1
No Yes Streptococcus suis SS12   2 2
No Yes Streptococcus suis D12   4 4
No Yes Streptococcus suis ST1   25 25
No Yes Streptococcus suis A7   1 1
No Yes Streptococcus suis JS14   2 2
No Yes Streptococcus suis BM407   2 2
No Yes Streptococcus suis SC84   2 2
No Yes Streptococcus suis GZ1   2 2
No Yes Streptococcus suis 98HAH33   2 2
No Yes Streptococcus suis 05ZYH33   2 2
No Yes Streptococcus salivarius CCHSS3   14 14
No Yes Streptococcus salivarius JIM8777   1 1
No Yes Exiguobacterium antarcticum B7   1 1
No Yes Paenibacillus sp. Y412MC10   2 2
No Yes Paenibacillus larvae subsp. larvae DSM 25430   1 1
No Yes Geobacillus sp. C56-T3   1 1
No Yes Amphibacillus xylanus NBRC 15112   1 1
No Yes Bacillus thuringiensis YBT-1518   3 3
No Yes Bacillus thuringiensis serovar finitimus YBT-020   2 2
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   3 3
No Yes Bacillus cereus FRI-35   1 1
No Yes Bacillus cereus G9842   1 1
No Yes Bacillus cereus Q1   2 2
No Yes Bacillus cereus ATCC 14579   5 5
No Yes Staphylococcus pasteuri SP1   1 1
No Yes Salinibacter ruber DSM 13855   2 2
No Yes Thermotoga maritima MSB8   2 2
No Yes Fusobacterium nucleatum subsp. animalis 4_8   1 1
No Yes Helicobacter pylori BM012S   1 1
No Yes Helicobacter pylori BM012A   1 1
No Yes Helicobacter pylori HUP-B14   1 1
No Yes Helicobacter pylori PeCan18   2 2
No Yes Helicobacter pylori Shi112   2 2
No Yes Helicobacter pylori Cuz20   1 1
No Yes Helicobacter pylori PeCan4   1 1
No Yes Candidatus Symbiobacter mobilis Comamonadaceae bacterium CR   3 3
No Yes Nitrosomonas sp. AL212   1 1
No Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749   9 9
No Yes Vibrio cholerae M66-2   3 3
No Yes Vibrio cholerae O395   5 5
No Yes Vibrio cholerae IEC224   3 3
No Yes Vibrio cholerae O1 str. 2010EL-1786   3 3
No Yes Vibrio cholerae MJ-1236   3 3
No Yes Vibrio cholerae O1 biovar El Tor str. N16961   3 3
No Yes Shewanella baltica BA175   1 1
No Yes Klebsiella oxytoca KCTC 1686   3 3
No Yes Sulfolobus islandicus LAL14/1   1 1
No Yes Sulfolobus islandicus HVE10/4   2 2
No Yes Sulfolobus islandicus M.16.27   1 1
No Yes Sulfolobus islandicus M.14.25   1 1
No Yes Sulfolobus islandicus M.16.4   1 1
No Yes Sulfolobus solfataricus 98/2   1 1
No Yes Methanomethylovorans hollandica DSM 15978   1 1
No Yes Methanolobus psychrophilus R15   1 1
No Yes Methanosarcina mazei Tuc01   1 1
No Yes Archaeoglobus sulfaticallidus PM70-1   1 1
No Yes Ferroplasma acidarmanus fer1   1 1
No Yes Natrinema pellirubrum DSM 15624   1 1
No Yes Halorhabdus tiamatea SARL4B   1 1
No Yes Natronomonas moolapensis 8.8.11   2 2
No Yes Haloarcula hispanica N601   1 1
No Yes 3_050719R (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   1 1
No Yes 4_Deep_abyss (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   7 7
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP2 from Nymph Lake 10 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   3 3
No Yes Human Gut Community Subject 7 (meta-genome)   9 9
No Yes Human Gut Community Subject 8 (meta-genome)   10 10
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   26 26
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes Mouse Gut Community lean3 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   6923 6923
No Yes Nymph Lake Bulk Water (meta-genome)   1 1
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   3 3
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   7 7
No Yes Sludge/US, Jazz Assembly (meta-genome)   1 1
No Yes Sludge/US, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   247 247
No Yes Uniprot 2018_03 genome   2901 2901
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   5 5
No Yes Global Ocean Sampling Expedition (GOS)   10 10
No Yes NCBI plasmid sequences (Plasmids)   41 41
No Yes NCBI viral sequences (Viral)   10 10
No Yes PDB chains (SCOP 1.75) (PDB)   4 4
No Yes Protein Data Bank (all PDB sequenc)   44 44
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   106 106
No Yes TargetDB (Targets)   10 10
No Yes UniProt viral sequences (Viral)   3 3

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