SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

AFP III-like domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 6 SUPERFAMILY models representing the AFP III-like domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0044870 73 2005-09-08 d1vlia1 AFP III-like domain
0035874 120 2005-09-08 d1c8aa2 AFP III-like domain
0053323 112 2008-09-10 d3nlaa_ AFP III-like domain
0041966 36 2005-09-08 d1opsa_ AFP III-like domain
0051113 345 2008-09-10 d1xuua1 AFP III-like domain
0038585 88 2005-09-08 d1hg7a_ AFP III-like domain