SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Cobalamin (vitamin B12)-binding domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 6 SUPERFAMILY models representing the Cobalamin (vitamin B12)-binding domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046814 1406 2008-09-10 d1fmfa_ Cobalamin (vitamin B12)-binding domain
0035625 482 2005-09-08 d1bmta2 Cobalamin (vitamin B12)-binding domain
0053374 251 2008-09-10 d7reqb2 Cobalamin (vitamin B12)-binding domain
0046110 1397 2008-09-10 d1ccwa_ Cobalamin (vitamin B12)-binding domain
0051084 893 2008-09-10 d1xrsb1 Cobalamin (vitamin B12)-binding domain
0045651 160 2005-09-08 d7reqa2 Cobalamin (vitamin B12)-binding domain