SUPERFAMILY 1.75 HMM library and genome assignments server

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Microbial ribonucleases superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 13 SUPERFAMILY models representing the Microbial ribonucleases superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0034843 42 2005-09-08 d1a2pa_ Bacterial ribonucleases
0045433 41 2005-09-08 d2rbia_ Bacterial ribonucleases
0042517 45 2005-09-08 d1pyla_ Bacterial ribonucleases
0038193 42 2005-09-08 d1goua_ Bacterial ribonucleases
0040915 45 2005-09-08 d1mgra_ Bacterial ribonucleases
0043224 45 2005-09-08 d1rgea_ Bacterial ribonucleases
0046308 91 2008-09-10 d1de3a_ Ribotoxin
0045811 88 2008-09-10 d1aqza_ Ribotoxin
0049104 105 2008-09-10 d1r4ya_ Ribotoxin
0043375 29 2005-09-08 d1rtua_ Fungal ribonucleases
0049216 117 2008-09-10 d1rmsa_ Fungal ribonucleases
0037789 31 2005-09-08 d1fusa_ Fungal ribonucleases
0038822 30 2005-09-08 d1i0va_ Fungal ribonucleases