SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Amine oxidase N-terminal region superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 10 SUPERFAMILY models representing the Amine oxidase N-terminal region superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0041760 60 2005-09-08 d1oaca3 Amine oxidase N-terminal region
0041277 159 2005-09-08 d1n9ea2 Amine oxidase N-terminal region
0047870 127 2008-09-10 d1ksia2 Amine oxidase N-terminal region
0041759 69 2005-09-08 d1oaca2 Amine oxidase N-terminal region
0040243 47 2005-09-08 d1ksia3 Amine oxidase N-terminal region
0050378 197 2008-09-10 d1w6ga3 Amine oxidase N-terminal region
0046576 252 2008-09-10 d1ekma2 Amine oxidase N-terminal region
0041278 28 2005-09-08 d1n9ea3 Amine oxidase N-terminal region
0037058 49 2005-09-08 d1ekma3 Amine oxidase N-terminal region
0050377 24 2008-09-10 d1w6ga2 Amine oxidase N-terminal region