SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

AbrB/MazE/MraZ-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 4 SUPERFAMILY models representing the AbrB/MazE/MraZ-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0053927 721 2010-05-31 d2fy9a1 AbrB N-terminal domain-like
0051298 630 2008-09-10 d1yfba1 AbrB N-terminal domain-like
0049850 526 2008-09-10 d1ub4c_ Kis/PemI addiction antidote
0048250 544 2008-09-10 d1n0ea_ Hypothetical protein MraZ