SUPERFAMILY 1.75 HMM library and genome assignments server

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Plant ANatomical entity (PAN): primary root

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Root: AP Hierarchy (arabidopsis plant ontology with 2 sub-ontologies AN, DE)

Shortest distance to current term (+ for parents, - for children) AP term [AP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   plant anatomical entity [PO:0025131] <3>
+ + + + + 5:   plant structure [PO:0009011] <13>(589|796) (590|352|108)
+ + + + 4:   multi-tissue plant structure [PO:0025496] <4>(317|465) (320|215|71)
+ + + + 4:   collective plant structure [PO:0025497] <2>(568|768) (570|338|104)
+ + + 3:   plant organ [PO:0009008] <10>(308|459) (311|212|70)
+ + + 3:   collective plant organ structure [PO:0025007] <7>(531|726) (533|315|98)
+ + 2:   root system [PO:0025025] <3>(172|277) (175|127|50)
+ + 2:   plant axis [PO:0025004] <12>(241|376) (242|173|62)
+ 1:   root [PO:0009005] <20>(163|271) (163|125|50)
0:   primary root [PO:0020127] <2>(8|6) (8|1|0)
- 1:   primary root tip [PO:0000026] <3>(2|2) (2|0|0)
- 1:   primary root differentiation zone [PO:0003015](1|1) (1|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0.000000005827Direct
Magnesium transport protein CorA, transmembrane region0.00000003462Direct
Skp1 dimerisation domain-like0.000002058Direct
Bet v1-like0.00002003Direct
NAC domain0.0002695Direct
HLH, helix-loop-helix DNA-binding domain0.000356Direct
beta-beta-alpha zinc fingers0.0004596Direct
Leucine zipper domain0.0007691Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain0.000000009909Direct
Magnesium transport protein CorA, transmembrane region0.00000001138Direct
Skp1 dimerisation domain-like0.00005474Direct
NAC domain0.0002573Direct
HLH, helix-loop-helix DNA-binding domain0.0003339Direct
Leucine zipper domain0.0006763Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0.000000004508Direct
Magnesium transport protein CorA, transmembrane region0.00000002681Direct
Skp1 dimerisation domain-like0.000001599Direct
Bet v1-like0.00001563Direct
NAC domain0.0002119Direct
HLH, helix-loop-helix DNA-binding domain0.0002804Direct
beta-beta-alpha zinc fingers0.0003626Direct
Leucine zipper domain0.0006085Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0.000001599Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)